PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_024976371.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 234aa MW: 26209.8 Da PI: 5.5418 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 81.8 | 4.5e-26 | 10 | 59 | 2 | 51 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 +i+n + rqvtfskRr g+lKKAeEL vLCda+va++ifs tgkl+ey+s XP_024976371.1 10 KIDNITARQVTFSKRRRGLLKKAEELAVLCDADVALVIFSATGKLFEYAS 59 69**********************************************86 PP | |||||||
2 | K-box | 46 | 2.2e-16 | 96 | 172 | 23 | 99 |
K-box 23 kLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 ++ ke+ re+ +l GedL+ L+l+eLq+Le+ Le +l+++ ++K+e + ++i +lq+k +l eenk L+++++ XP_024976371.1 96 RMGKEVVDRNRELSRLRGEDLNGLTLEELQRLENLLEGGLNRVLQTKDERIANEIANLQQKGFQLMEENKLLKQQMM 172 555666666788999***********************************************************986 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 234 aa Download sequence |
MAREKIKIRK IDNITARQVT FSKRRRGLLK KAEELAVLCD ADVALVIFSA TGKLFEYASS 60 SMQELLGKYK LHSTNNVDKV GEPSLNLQLV ESDDSRMGKE VVDRNRELSR LRGEDLNGLT 120 LEELQRLENL LEGGLNRVLQ TKDERIANEI ANLQQKGFQL MEENKLLKQQ MMTLISKGKR 180 PRATAAELEN SVINLEDQGQ SSESVATNVY SCNSGPPPED DCSDTSLKLA LPFN |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G22540.1 | 4e-72 | MIKC_MADS family protein |