PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024976367.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family Nin-like
Protein Properties Length: 358aa    MW: 40558.7 Da    PI: 4.7658
Description Nin-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024976367.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1RWP-RK83.91.5e-26193241452
          RWP-RK   4 eisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 
                     ++s e++s+yF++pi++AAkeL+v+lT+LK++CR++GI+RWPhRk+ sl
  XP_024976367.1 193 TLSREMISQYFYMPITQAAKELNVGLTLLKKRCRELGIRRWPHRKLMSL 241
                     6899******************************************997 PP
Sequence ? help Back to Top
Protein Sequence    Length: 358 aa     Download sequence    
MGSQDSWEIE WSNQEIVPKE DEVFPFPQQL PPLDLRYPDQ SGCSIYSDHL FSVQQDHLHD  60
ATSLMDIMIS NNNPICSSMD ILRADSTFYE EGFLVGGDGE LGFPADQEMS MMNSLGFQDQ  120
EMYMMTTNSL GFLHESQPGL MAMKNMNDNE EMKMARSSGC RKPLKEVDHK GGGDHGGNVD  180
QGGCGFSYPM RMTLSREMIS QYFYMPITQA AKELNVGLTL LKKRCRELGI RRWPHRKLMS  240
LQTLITNVQE LGKSSGNGAE EKLQEAVALL EKERKKMEEI PDLQLEDNTK RLRQACFKAN  300
YKKRKTTNSS TLTAYRQSSS SCSTTSVDHG GYEDLENDEE IKSMLFLDCF PSSSNNLF
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G18790.12e-53Nin-like family protein