PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_024976362.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
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Family | LBD | ||||||||
Protein Properties | Length: 743aa MW: 82807.4 Da PI: 5.8942 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 110.7 | 1.1e-34 | 11 | 107 | 1 | 97 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 aCaaCk++r++C+++C+lap+f e+p f+nvhklFG++++l++l+++++ ++++am+s++yeA++r + Pv+G++gvi +l q++q++ el XP_024976362.1 11 ACAACKYQRKRCTPECALAPHFRPEHPTVFRNVHKLFGVRKILRILEEIDHYQQPEAMRSIIYEANMRDQFPVHGCLGVICELWCQIRQAEDELR 105 7******************************************************************************************9998 PP DUF260 96 ll 97 ++ XP_024976362.1 106 SV 107 65 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 743 aa Download sequence |
MTLKGATTSQ ACAACKYQRK RCTPECALAP HFRPEHPTVF RNVHKLFGVR KILRILEEID 60 HYQQPEAMRS IIYEANMRDQ FPVHGCLGVI CELWCQIRQA EDELRSVLTR LAFYKQDHEQ 120 QRTTALSPVV FRGSLQLGMA IAPPDIAPLT LFQDEATTTM PISSHNNTGM CINTLWLQET 180 NNTNNHHHSP LMSQPSVIEE AVNNHDGIFP FFDHIEDRQL HIDSKEKNES SLDDSCQLKL 240 CSDNGANCCD SNGLRAPNGL CLEKLGNGSY VDMVPHPDGS NRVFVCNQQG KIWLTMVPEV 300 GSSQSLMMDE SDPFFDLSDQ VQFATEMGLT SIAFHPNFTS NGRFFVAYNC DKFQQSGCEG 360 RCSCNTDVGC DPSNDGSLQE TYPCQFHVAI AEFTANGTTT STKLSWMGHA NLVEVRRIFT 420 MGLPFEAYHA GQILFGPADG YLYFMIGDAS HDADPYNFAQ NKRSLLGKIL RLDVDIIPSA 480 AEISRLGLWG NYSIPKDNPY TTDKELNPEI WALGFSNPWR CSFDSENPSR FICGDIGKNQ 540 YEEIDLIKKG GNYGWRVYEG PHLFHPSHAP GGYTKPSSIT PIFPLAGYNH DSIDANKGPA 600 SVIGGYFYRS ATDPCLYGWY IYTDLYSYAI WATIEATENS ENFKSFGVPF GCAHDSPIQC 660 GLKPGSHGVP DLGYVVSLSE DNNKDVYLLT SSGVYRVAAP SRCGYRCAKE RYSNLTKVPT 720 SGALLKAAKF ALFFLSFLVL VFL |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G47870.1 | 1e-38 | LBD family protein |