PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024976362.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family LBD
Protein Properties Length: 743aa    MW: 82807.4 Da    PI: 5.8942
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024976362.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260110.71.1e-3411107197
          DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 
                     aCaaCk++r++C+++C+lap+f  e+p  f+nvhklFG++++l++l+++++ ++++am+s++yeA++r + Pv+G++gvi +l  q++q++ el 
  XP_024976362.1  11 ACAACKYQRKRCTPECALAPHFRPEHPTVFRNVHKLFGVRKILRILEEIDHYQQPEAMRSIIYEANMRDQFPVHGCLGVICELWCQIRQAEDELR 105
                     7******************************************************************************************9998 PP

          DUF260  96 ll 97 
                     ++
  XP_024976362.1 106 SV 107
                     65 PP

Sequence ? help Back to Top
Protein Sequence    Length: 743 aa     Download sequence    
MTLKGATTSQ ACAACKYQRK RCTPECALAP HFRPEHPTVF RNVHKLFGVR KILRILEEID  60
HYQQPEAMRS IIYEANMRDQ FPVHGCLGVI CELWCQIRQA EDELRSVLTR LAFYKQDHEQ  120
QRTTALSPVV FRGSLQLGMA IAPPDIAPLT LFQDEATTTM PISSHNNTGM CINTLWLQET  180
NNTNNHHHSP LMSQPSVIEE AVNNHDGIFP FFDHIEDRQL HIDSKEKNES SLDDSCQLKL  240
CSDNGANCCD SNGLRAPNGL CLEKLGNGSY VDMVPHPDGS NRVFVCNQQG KIWLTMVPEV  300
GSSQSLMMDE SDPFFDLSDQ VQFATEMGLT SIAFHPNFTS NGRFFVAYNC DKFQQSGCEG  360
RCSCNTDVGC DPSNDGSLQE TYPCQFHVAI AEFTANGTTT STKLSWMGHA NLVEVRRIFT  420
MGLPFEAYHA GQILFGPADG YLYFMIGDAS HDADPYNFAQ NKRSLLGKIL RLDVDIIPSA  480
AEISRLGLWG NYSIPKDNPY TTDKELNPEI WALGFSNPWR CSFDSENPSR FICGDIGKNQ  540
YEEIDLIKKG GNYGWRVYEG PHLFHPSHAP GGYTKPSSIT PIFPLAGYNH DSIDANKGPA  600
SVIGGYFYRS ATDPCLYGWY IYTDLYSYAI WATIEATENS ENFKSFGVPF GCAHDSPIQC  660
GLKPGSHGVP DLGYVVSLSE DNNKDVYLLT SSGVYRVAAP SRCGYRCAKE RYSNLTKVPT  720
SGALLKAAKF ALFFLSFLVL VFL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G47870.11e-38LBD family protein