PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024976331.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

Trihelix

Protein Properties

Length: 337aa MW: 37890.9 Da PI: 4.7925

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024976331.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	78.7	8.8e-25	53	144	1	83
trihelix 1 rWtkqevlaLiearremeerlrrgk.........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfd 83 rWt+qe+l+Lie+++ e+r rrg+ + +p+W++v+++++++ ++r+p+qC+++w+n+ +++kkik++e++ ++es s +++ + XP_024976331.1 53 RWTRQETLTLIEGKKVAENRGRRGRrsssvfgsdQLEPKWDSVASYCKQHAVNRGPVQCRKRWSNMVGDFKKIKAWESEVKQESDSYWVMRN 144 8*******************98666777777799******************************************999999998865 PP

Sequence ? help Back to Top
Protein Sequence Length: 337 aa Download sequence
MASETDEVCD NGGSAEIQVG VEDQETPVTV VAAEAVAAVE VVDDKSKSPR HPRWTRQETL 60 TLIEGKKVAE NRGRRGRRSS SVFGSDQLEP KWDSVASYCK QHAVNRGPVQ CRKRWSNMVG 120 DFKKIKAWES EVKQESDSYW VMRNDSRKEN KLPGFFDREV FDVLDGKAFT KAAYKLALVT 180 VSADAKDENV DTDVVFDSGR RATSTDGLFP DSDKMEDEEA NDEGREKDDI PTKKIPDPMP 240 ISGAVREQQT NSVSWKETMS QEGSKRRRVS TDECNDRNFD ARLIDVLEKN ANVLNARLEA 300 ENTNCQLDRD QRKDYNDSLV SALNKISDAL TKIADKL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	265	269	KRRRV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33550.1	4e-85	Trihelix family protein