PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024976284.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family GRAS
Protein Properties Length: 461aa    MW: 52578.7 Da    PI: 7.1057
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024976284.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS378.21e-115664601373
            GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar..svselykalppsetsekn....sseelaalkl..fsev 87 
                     +++lLl+cA+ +s +d ++a++l++ ls+++sp+gd+  Rl++ ft+AL+ rl+   + ++l ++ +   t++ n      +++   ++  ++++
  XP_024976284.1  66 MRQLLLSCAQLISRSDITAAHRLISILSTNSSPYGDSSDRLVHSFTKALSIRLHPniNPPNLTDSNNFIITQRCNtssnYNDAILQSSYlsLNQI 160
                     589**************************************************99433455655544333322222223333332222246**** PP

            GRAS  88 sPilkfshltaNqaIleavege.............ervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfA 169
                     +P+++fs+ltaNqaIlea+++              + +Hi+Dfdi++G+QWp+L+qa+a+R + pp+lRiT+ g     + + l++tg+rL+kfA
  XP_024976284.1 161 TPFIRFSQLTANQAILEAIDQPqpqnhsftsspqpHDIHILDFDIMHGVQWPPLMQAIADR-HHPPTLRITATGT----NLDILRRTGDRLSKFA 250
                     *******************9876777778878888889***********************.567**********....99************** PP

            GRAS 170 eelgvpfefnvl.......vakrledl..eleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFle 255
                     ++lg++f+f +l        +++++d+  +l++  + p+E laVn+vl lhrll ++ +l      +L+ +k ++P+vv+++e+ea+hn++ Fl 
  XP_024976284.1 251 HSLGLRFRFFPLllpdqtnNHHTVDDVinHLSAVLLLPNEILAVNCVLYLHRLLIDRDKLCL----LLRKIKAMNPRVVTLAEREANHNHPIFLS 341
                     ***********998887654445555544445555667****************66555555....***************************** PP

            GRAS 256 rflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgy 349
                     rf+ea++yy+a+f+slea+lp++s+eri vE++++grei ++va+eg++r+erhe++++W+ ++++aGF++v+ls +a +qaklllr ++ s+gy
  XP_024976284.1 342 RFTEAMNYYTAVFESLEATLPPNSRERIEVEQVWFGREIADIVAAEGENRKERHERYRSWEVMMRSAGFRNVSLSPYALSQAKLLLRLHYpSEGY 436
                     *********************************************************************************************** PP

            GRAS 350 rveeesgslvlgWkdrpLvsvSaW 373
                     ++e  ++s++lgW+++ L+svS+W
  XP_024976284.1 437 NLEVTNDSFFLGWQNQLLFSVSSW 460
                     ************************ PP
Sequence ? help Back to Top
Protein Sequence    Length: 461 aa     Download sequence    
MSASSSHSPL LHDNQDDLHV DLPPAAAPPP PPPSQQLNHL HSWFHYHPQI QQLGPEMIIT  60
PPSIQMRQLL LSCAQLISRS DITAAHRLIS ILSTNSSPYG DSSDRLVHSF TKALSIRLHP  120
NINPPNLTDS NNFIITQRCN TSSNYNDAIL QSSYLSLNQI TPFIRFSQLT ANQAILEAID  180
QPQPQNHSFT SSPQPHDIHI LDFDIMHGVQ WPPLMQAIAD RHHPPTLRIT ATGTNLDILR  240
RTGDRLSKFA HSLGLRFRFF PLLLPDQTNN HHTVDDVINH LSAVLLLPNE ILAVNCVLYL  300
HRLLIDRDKL CLLLRKIKAM NPRVVTLAER EANHNHPIFL SRFTEAMNYY TAVFESLEAT  360
LPPNSRERIE VEQVWFGREI ADIVAAEGEN RKERHERYRS WEVMMRSAGF RNVSLSPYAL  420
SQAKLLLRLH YPSEGYNLEV TNDSFFLGWQ NQLLFSVSSW H
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G55580.11e-112GRAS family protein