PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_024976249.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 200aa MW: 23818.9 Da PI: 7.388 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 52.9 | 6.1e-17 | 72 | 126 | 2 | 56 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +k+++++ +q++ Le+ Fe+++++ +++ + Ak+l+L+ rqV +WFqNrRa k XP_024976249.1 72 KKKRRLSVDQVKFLERSFEEKNKLEPDRKIQVAKELNLQPRQVEIWFQNRRACCK 126 56779**********************************************9665 PP | |||||||
2 | HD-ZIP_I/II | 122.1 | 2.7e-39 | 72 | 163 | 1 | 92 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 +kkrrls +qvk+LE+sFee++kLep+rK ++a+eL+lqprqv++WFqnrRA ktkqlEkdye L ++yd+lk+e + L+k++++L++e++ XP_024976249.1 72 KKKRRLSVDQVKFLERSFEEKNKLEPDRKIQVAKELNLQPRQVEIWFQNRRACCKTKQLEKDYEILNSSYDKLKSEFDCLQKHNDKLKHEVE 163 59**************************************************************************************9987 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 200 aa Download sequence |
MEGRVVFEAL LQTQRFDFVS DGFDSPWISN SFQDNPSNLD SSIGKKTNTK KRLSEQEENS 60 DEDYEKCFRP MKKKRRLSVD QVKFLERSFE EKNKLEPDRK IQVAKELNLQ PRQVEIWFQN 120 RRACCKTKQL EKDYEILNSS YDKLKSEFDC LQKHNDKLKH EVEMLKEKLH QREKGEKDSI 180 PNEFPTKELD SNAQEPKPLL |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 72 | 76 | KKKRR |
2 | 72 | 77 | KKKRRL |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G01470.1 | 2e-37 | HD-ZIP family protein |