PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024976243.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

bHLH

Protein Properties

Length: 370aa MW: 41040.4 Da PI: 4.7436

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024976243.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	32.7	1.3e-10	298	338	10	55
HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 r+RR+riN+++ L+ l+P+ +K++ +++Le+Av+Y+k Lq XP_024976243.1 298 RKRRERINERLKILQNLVPNG-----TKVDISTMLEEAVHYVKFLQ 338 9****************97.....8****************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 370 aa Download sequence
MESFGSLFDE EWENLSRMFS GDQDSDHFPS HGLFSSEHDD HGLNFETPSI VSSVMAECYN 60 DNSSFIDHRI ASENINPNFY HYFSQESNIN GCAAYDGAVS LPYPSNSNIT PLPTNGVCDD 120 ESVSLFDENN NNSSLLAQVF SEDSMEEILC LKEDVIMENS VSPSVSIADQ RKHAPVKRKI 180 ETSESPKVVV DKVNNEIPNK KTRVSRSDNK NKKKVQPKNK QKVMAPATVN GNGNIDGLED 240 TNNNKGGGNA PTASSCSCSS EDDLSLSQDP NGSGGVNSNW KTRASRGAAT DPQSLYARKR 300 RERINERLKI LQNLVPNGTK VDISTMLEEA VHYVKFLQLQ IKLLSSDEMW MYAPIAYNGM 360 DMGLYQKLQI

Sequence ? help Back to Top

Protein Sequence Length: 370 aa Download sequence

MESFGSLFDE EWENLSRMFS GDQDSDHFPS HGLFSSEHDD HGLNFETPSI VSSVMAECYN  60
DNSSFIDHRI ASENINPNFY HYFSQESNIN GCAAYDGAVS LPYPSNSNIT PLPTNGVCDD  120
ESVSLFDENN NNSSLLAQVF SEDSMEEILC LKEDVIMENS VSPSVSIADQ RKHAPVKRKI  180
ETSESPKVVV DKVNNEIPNK KTRVSRSDNK NKKKVQPKNK QKVMAPATVN GNGNIDGLED  240
TNNNKGGGNA PTASSCSCSS EDDLSLSQDP NGSGGVNSNW KTRASRGAAT DPQSLYARKR  300
RERINERLKI LQNLVPNGTK VDISTMLEEA VHYVKFLQLQ IKLLSSDEMW MYAPIAYNGM  360
DMGLYQKLQI

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G33880.1	2e-53	bHLH family protein