PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024976220.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

FAR1

Protein Properties

Length: 419aa MW: 48031.3 Da PI: 6.6437

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024976220.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	57.7	4e-18	131	226	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk......tekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHe 88 k+Y++YA+e+GF+vr s++k + +ng it+r +vCskeg++ ++ + +++ r+++++r +C a++k+ k ++ev+++ + HnH XP_024976220.1 131 KMYQKYANEAGFDVRLSNKKIN-KNGCITSRFYVCSKEGRPPSKYFDsldvlpGDRRIRNSNVKRSDCGACFKIYFVKeWRQYEVYRFIELHNHM 224 68************987777.8899**********9999889999899999*************9988789***********9 PP FAR1 89 la 90 l+ XP_024976220.1 225 LF 226 97 PP

Sequence ? help Back to Top
Protein Sequence Length: 419 aa Download sequence
MDYMPFNETS SKDIVEESSV FDSMNDCQGF DYGGENATAV NNETIEDQCN YSMRNEDGCN 60 DRNETVSEHN DGVFLDFVDI DVASLSNEAE DXXSDGMGET NDGSKCWFPN VDVEYKPKVG 120 DGFETVESAE KMYQKYANEA GFDVRLSNKK INKNGCITSR FYVCSKEGRP PSKYFDSLDV 180 LPGDRRIRNS NVKRSDCGAC FKIYFVKEWR QYEVYRFIEL HNHMLFNKEE MRFSRSKRQL 240 HYADHKTVFH GSSSKVGVTK SNRFRKAITG GVDCSGGTVR DHQNFKRDMS YFVGNKDAQM 300 LLNVMSNKRK ELLAIFWADE TARSNYKEFG DAISFDATFR TNKHAMIFVP FVAIDNHKKF 360 VVVGAALIHN ESVVDYTWVL KAFVKAHGRQ PRFVITDQCA SMKQAILIAF PESKHRLYQ

Sequence ? help Back to Top

Protein Sequence Length: 419 aa Download sequence

MDYMPFNETS SKDIVEESSV FDSMNDCQGF DYGGENATAV NNETIEDQCN YSMRNEDGCN  60
DRNETVSEHN DGVFLDFVDI DVASLSNEAE DXXSDGMGET NDGSKCWFPN VDVEYKPKVG  120
DGFETVESAE KMYQKYANEA GFDVRLSNKK INKNGCITSR FYVCSKEGRP PSKYFDSLDV  180
LPGDRRIRNS NVKRSDCGAC FKIYFVKEWR QYEVYRFIEL HNHMLFNKEE MRFSRSKRQL  240
HYADHKTVFH GSSSKVGVTK SNRFRKAITG GVDCSGGTVR DHQNFKRDMS YFVGNKDAQM  300
LLNVMSNKRK ELLAIFWADE TARSNYKEFG DAISFDATFR TNKHAMIFVP FVAIDNHKKF  360
VVVGAALIHN ESVVDYTWVL KAFVKAHGRQ PRFVITDQCA SMKQAILIAF PESKHRLYQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	2e-30	FAR1 family protein