PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024976210.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

FAR1

Protein Properties

Length: 764aa MW: 86744.4 Da PI: 7.7372

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024976210.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	49.7	1.3e-15	90	186	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk......tekerrtraetrtgCkaklkvkkek..dgkwevtkleleHnH 87 ++Y++YA vGF++r s++k++ + g ++ + vC k+gk+++++ + ++++ r+++ + t+Cka+++ k + ++ ++++ + l+HnH XP_024976210.1 90 EMYRRYADIVGFDIRLSTQKTR-KGGIVKLKYVVCHKHGKPKKRSVDsvevdgHRRQVRNTNFKVTNCKASVRFKYIEvsQSSYRLYYFCLNHNH 183 58************987665.78878888889******9999999988888899999********9999899*********** PP FAR1 88 ela 90 +l XP_024976210.1 184 DLI 186 995 PP

Sequence ? help Back to Top
Protein Sequence Length: 764 aa Download sequence
MAKILSLINP KTTSDGASTN MAATTAFDTQ NIDGIDLQVI TVAVIMVSFV LPAQGVIESP 60 CCDGVCIPSV PSEFQPVVGS IFTSLEDGIE MYRRYADIVG FDIRLSTQKT RKGGIVKLKY 120 VVCHKHGKPK KRSVDSVEVD GHRRQVRNTN FKVTNCKASV RFKYIEVSQS SYRLYYFCLN 180 HNHDLIDDAD RILSSKSRQL SYDDKVMVHR SAMSNIGLVR AHKLQVCLKG GYDEVGSTVV 240 DYKNFKRDLN NYIGDGDMRS SLKDSKDDIQ MQIEPEKTST SRGSSRRERK MALQQDVDKL 300 RKRLTHEENV HKALEQALAR PFGALHRLPP DLPPVTLELL AEVAVLEEEV IRLEDQVVQY 360 RQNLYEEAIY ISFYKRNLEN SATDLQENCP SPLRPGDAFT SEMVKERVNE LCTNPTTNKQ 420 QSPNPKTQRI KTLKRSPIDY MSSEKCLDQG DDSPNKISER ILKCLMFIFA QMSSTSALRM 480 TEMLPSLASC ENPSTTDFKD PYDVFYKFEN TDIGPYKYLY EVEATAINKN RTTISVFLSQ 540 RLKILLGKLG SVNLTSLTHQ EKLAFWINIY NSCMMNAFLE HGIPETPERV IQLTQEAIIN 600 VGGHLLNAFN IEHYILRLPY HSKCVSEKGV KNDEITTRSI FGLELSEPLV TFALSCGSWS 660 SPAVRVYTGS EVVNELEVAK RDYLLAAVGI SSTKKSLTIP KRLDWYMLDF AKDMESFLDW 720 ICLQFPSEVG KVAMECLHRE KTKPLSDCVR VGAYEFHFRY LLYK

Sequence ? help Back to Top

Protein Sequence Length: 764 aa Download sequence

MAKILSLINP KTTSDGASTN MAATTAFDTQ NIDGIDLQVI TVAVIMVSFV LPAQGVIESP  60
CCDGVCIPSV PSEFQPVVGS IFTSLEDGIE MYRRYADIVG FDIRLSTQKT RKGGIVKLKY  120
VVCHKHGKPK KRSVDSVEVD GHRRQVRNTN FKVTNCKASV RFKYIEVSQS SYRLYYFCLN  180
HNHDLIDDAD RILSSKSRQL SYDDKVMVHR SAMSNIGLVR AHKLQVCLKG GYDEVGSTVV  240
DYKNFKRDLN NYIGDGDMRS SLKDSKDDIQ MQIEPEKTST SRGSSRRERK MALQQDVDKL  300
RKRLTHEENV HKALEQALAR PFGALHRLPP DLPPVTLELL AEVAVLEEEV IRLEDQVVQY  360
RQNLYEEAIY ISFYKRNLEN SATDLQENCP SPLRPGDAFT SEMVKERVNE LCTNPTTNKQ  420
QSPNPKTQRI KTLKRSPIDY MSSEKCLDQG DDSPNKISER ILKCLMFIFA QMSSTSALRM  480
TEMLPSLASC ENPSTTDFKD PYDVFYKFEN TDIGPYKYLY EVEATAINKN RTTISVFLSQ  540
RLKILLGKLG SVNLTSLTHQ EKLAFWINIY NSCMMNAFLE HGIPETPERV IQLTQEAIIN  600
VGGHLLNAFN IEHYILRLPY HSKCVSEKGV KNDEITTRSI FGLELSEPLV TFALSCGSWS  660
SPAVRVYTGS EVVNELEVAK RDYLLAAVGI SSTKKSLTIP KRLDWYMLDF AKDMESFLDW  720
ICLQFPSEVG KVAMECLHRE KTKPLSDCVR VGAYEFHFRY LLYK

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	298	303	DKLRKR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G10240.1	5e-11	FAR1 family protein