PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024976188.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family MIKC_MADS
Protein Properties Length: 282aa    MW: 32890 Da    PI: 7.361
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024976188.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF85.53.2e-27959151
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                    krien++ rqvtfskRr+g+lKK +ELSvLCda++ +i+fss+gkl+ey +
  XP_024976188.1  9 KRIENNTSRQVTFSKRRTGLLKKTHELSVLCDAQIGLIVFSSKGKLFEYTT 59
                    79***********************************************75 PP
2K-box67.16.1e-2375166595
           K-box   5 sgks.leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLr 95 
                     +g++  e+++ e+++ el+++kke+ nLq ++ +++G+dL+s +l+eL+qLeqqLe s++k+R++K +ll +q+++lq+ ek l++en+++ 
  XP_024976188.1  75 TGSRiPEHNNREQMHSELTRMKKETLNLQLSLQRYKGDDLSSAQLEELNQLEQQLEFSVQKVRARKFQLLQQQVDNLQRTEKVLEKENEEMY 166
                     55555678999*****************************************************************************9875 PP
Sequence ? help Back to Top
Protein Sequence    Length: 282 aa     Download sequence    
MGRGKIEVKR IENNTSRQVT FSKRRTGLLK KTHELSVLCD AQIGLIVFSS KGKLFEYTTH  60
PLSMAQIIDR YLKATGSRIP EHNNREQMHS ELTRMKKETL NLQLSLQRYK GDDLSSAQLE  120
ELNQLEQQLE FSVQKVRARK FQLLQQQVDN LQRTEKVLEK ENEEMYHWLM GKQQEEINQQ  180
QAAAMTELKL VGQEHQLFEQ FPFYGSEDQP NSVLQLAVNL PELQLHSYQY HLQPTQPNLQ  240
ESTSAHHNIY VFTSAILRIR QKDKDNYVCN CESXIHNCDG AI
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G23260.27e-64MIKC_MADS family protein