PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024976183.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

FAR1

Protein Properties

Length: 557aa MW: 64387 Da PI: 9.5552

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024976183.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	46.6	1.2e-14	39	112	24	90
FAR1 24 rngeitkrtfvCskegkreeekkk......tekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 g + +r fvCskeg + +++ + e++r++++ +rtgCka+lkv+ k +g+++v+++ + HnH l+ XP_024976183.1 39 SLGGVQTRYFVCSKEGIPPKKEFDslevssGERRRSNTNFKRTGCKACLKVHYVKeSGRYKVYHFIEAHNHMLC 112 45668999********999988999998888889999**********999**************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 557 aa Download sequence
MSEQGEDALS QEMGESPGGT KLWIPKVYSN ICPKEKMNSL GGVQTRYFVC SKEGIPPKKE 60 FDSLEVSSGE RRRSNTNFKR TGCKACLKVH YVKESGRYKV YHFIEAHNHM LCRSDEKMFT 120 RSRHQLDYKG RKNVYHASSS KVGITQSRRM QLAINGGLVS SSGTARDHMN FRRDILLFIG 180 NKDAQMLINK MSKRREHCPE YFFEYKCVEK ELIAIFWADE TARMNYKHFG NTISFDATFR 240 TNKHAMIFVP FVAIDNHKKS VVVGASLIRS ESVVNFTWVL KAFMKAHGSQ PQFIRDHLTH 300 GTPFKSKFNK LVWNVHISPE IFEEKWNAMM DEYGLRGHSW FEEMYAIRES WIPAYFKDYP 360 MFGLMKITSR SESINSFSNE MNKAVWFCGV VEVVEVGDKM IYSITHKNKN YEVKATYKVV 420 HDVRDESFDY SCNHFVRNGI LYRHAFKVMY GEMDVEKQVL INQAISMFDL IIGDVRNDKG 480 SLTEFVEQLE RLGDEITVDV PILTGIRNKG CGTGKRLVGM SERVSMNAKK PKRLCRTCEK 540 MGWHDSRNCP SKGDSMK

Sequence ? help Back to Top

Protein Sequence Length: 557 aa Download sequence

MSEQGEDALS QEMGESPGGT KLWIPKVYSN ICPKEKMNSL GGVQTRYFVC SKEGIPPKKE  60
FDSLEVSSGE RRRSNTNFKR TGCKACLKVH YVKESGRYKV YHFIEAHNHM LCRSDEKMFT  120
RSRHQLDYKG RKNVYHASSS KVGITQSRRM QLAINGGLVS SSGTARDHMN FRRDILLFIG  180
NKDAQMLINK MSKRREHCPE YFFEYKCVEK ELIAIFWADE TARMNYKHFG NTISFDATFR  240
TNKHAMIFVP FVAIDNHKKS VVVGASLIRS ESVVNFTWVL KAFMKAHGSQ PQFIRDHLTH  300
GTPFKSKFNK LVWNVHISPE IFEEKWNAMM DEYGLRGHSW FEEMYAIRES WIPAYFKDYP  360
MFGLMKITSR SESINSFSNE MNKAVWFCGV VEVVEVGDKM IYSITHKNKN YEVKATYKVV  420
HDVRDESFDY SCNHFVRNGI LYRHAFKVMY GEMDVEKQVL INQAISMFDL IIGDVRNDKG  480
SLTEFVEQLE RLGDEITVDV PILTGIRNKG CGTGKRLVGM SERVSMNAKK PKRLCRTCEK  540
MGWHDSRNCP SKGDSMK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	6e-46	FAR1 family protein