PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_024976136.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
|
||||||||
Family | bHLH | ||||||||
Protein Properties | Length: 273aa MW: 29712.2 Da PI: 9.4306 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 33.2 | 9.1e-11 | 156 | 203 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + +k Ka +L + ++YI+sLq XP_024976136.1 156 SHSLAERARREKISERMKILQDLVPGC----NKVIGKALVLDEIINYIQSLQ 203 8*************************9....677*****************9 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 273 aa Download sequence |
MDPPIINETS FSAANPSSYS LTGIWTFSSF NGGRNESLGL KMGSLISRLG EPNNNRDEES 60 TVTEHSGGAR KRRDANSEDE SSKLVSTSSG NDLIKLNGKR MKMSGSKEEL GGFSKMDREG 120 SSGSASKGGV GQTHKPSEPP KDYIHVRARR GQATDSHSLA ERARREKISE RMKILQDLVP 180 GCNKVIGKAL VLDEIINYIQ SLQHQVEFLS MKLEAVNTRM NSPVEGFPTK DLGPPPLDAA 240 GFLFGSQTAR QFGPGSQPEW LHMQLGNSFG RTT |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G62610.1 | 3e-85 | bHLH family protein |