PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024976062.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

bHLH

Protein Properties

Length: 424aa MW: 46780.9 Da PI: 6.96

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024976062.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	51.3	2e-16	256	305	2	55
HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 r +h++ E+rRR++iN++f+ Lr ++P+ ++K +Ka+ L +++eYI+ Lq XP_024976062.1 256 RSKHSATEQRRRSKINDRFSMLRGIIPHG----DQKRDKASFLLEVIEYIQFLQ 305 889***********************7....7*****************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 424 aa Download sequence
MELSQPRPCG AQGAKPTQDF LSLYSPAQQD PTPSIAGGYI RTHDFLQPLE QVGKNVAKEG 60 IEKSFLSGPP TMVEHILPGG MGTYSINHIS YINESQKVPK PEGIVTSAAQ SSSSNNNDEN 120 SNCSSYTGSG FTLWEESNVN RGKTGKENIA GTRHVIRDGG MKVGVPWMTS MERPSQSSSI 180 HNHPSTTFSS LSSSHPSSAP KNQYFLDAVK SAMSVREEEY NDEEFVIKKE PSFHHKGGIS 240 VKVGTTNPDQ KPDSPRSKHS ATEQRRRSKI NDRFSMLRGI IPHGDQKRDK ASFLLEVIEY 300 IQFLQEKVHK YEDSYQGWTN KPPNMTSLNN IPTKSLVDHQ PQLPNNTSRP AFVLDSNTSS 360 LDAIKETTNT SFPVAESFHT HICAPDTASK AQPQLLHSRS CTTDCTGDKL KDQDLIIESD 420 YAVV

Sequence ? help Back to Top

Protein Sequence Length: 424 aa Download sequence

MELSQPRPCG AQGAKPTQDF LSLYSPAQQD PTPSIAGGYI RTHDFLQPLE QVGKNVAKEG  60
IEKSFLSGPP TMVEHILPGG MGTYSINHIS YINESQKVPK PEGIVTSAAQ SSSSNNNDEN  120
SNCSSYTGSG FTLWEESNVN RGKTGKENIA GTRHVIRDGG MKVGVPWMTS MERPSQSSSI  180
HNHPSTTFSS LSSSHPSSAP KNQYFLDAVK SAMSVREEEY NDEEFVIKKE PSFHHKGGIS  240
VKVGTTNPDQ KPDSPRSKHS ATEQRRRSKI NDRFSMLRGI IPHGDQKRDK ASFLLEVIEY  300
IQFLQEKVHK YEDSYQGWTN KPPNMTSLNN IPTKSLVDHQ PQLPNNTSRP AFVLDSNTSS  360
LDAIKETTNT SFPVAESFHT HICAPDTASK AQPQLLHSRS CTTDCTGDKL KDQDLIIESD  420
YAVV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G08130.2	8e-69	bHLH family protein