PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_024975988.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 192aa MW: 22044.3 Da PI: 7.9647 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 83.3 | 1.5e-26 | 17 | 67 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 k+i+n + r vtfskRr g++KKAeELSvLCda+vavi+fss++kl+ yss XP_024975988.1 17 KKIDNATARRVTFSKRRRGLFKKAEELSVLCDADVAVILFSSNDKLFHYSS 67 68***********************************************96 PP | |||||||
2 | K-box | 53.8 | 8.4e-19 | 100 | 178 | 19 | 97 |
K-box 19 qelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkk 97 +++a+L ke+ + e+R+l Ge+L+ L ++eL+qLe+ Le +l+++ +kK e ++++i++lq+ke +l een +Lr++ XP_024975988.1 100 TNYANLSKEVAERTLELRRLRGEELQGLGIEELHQLEKSLEAGLSRVVAKKGEAIMNEINHLQEKEVKLMEENDKLRQE 178 679999999999999**************************************************************97 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 192 aa Download sequence |
MLCCTGGMMA REKVQIKKID NATARRVTFS KRRRGLFKKA EELSVLCDAD VAVILFSSND 60 KLFHYSSSSM KEVLERRSLH SRNLEKLNQP SLELQLVEDT NYANLSKEVA ERTLELRRLR 120 GEELQGLGIE ELHQLEKSLE AGLSRVVAKK GEAIMNEINH LQEKEVKLME ENDKLRQEQA 180 WSLSLSLYTC FS |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G22540.1 | 2e-66 | MIKC_MADS family protein |