PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024975958.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family bHLH
Protein Properties Length: 314aa    MW: 34705 Da    PI: 5.5904
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024975958.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH27.84.6e-09160207455
                     HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     +h+ +Er RR++iN ++  L+el+P +    +k    a++L + +++++ Lq
  XP_024975958.1 160 SHSLAERARREKINARMKLLQELVPGC----NKISGTAMVLDEIINHVQCLQ 207
                     8*************************9....899999***********9998 PP
Sequence ? help Back to Top
Protein Sequence    Length: 314 aa     Download sequence    
MEKREEMGVD SFQFGEEIQS LMSVVQPPEA GNSFTALLEL PPNQAVKLLH SPEETTPNIF  60
PSVFAVIETD NSLDTTSSIR PNSSPNNCNL VKQEPIDSYS LHNSSPMQSD PIISKSAKRK  120
EREKKVKSSA KKSKNVADET DGEKLPYVHV RARRGQATDS HSLAERARRE KINARMKLLQ  180
ELVPGCNKIS GTAMVLDEII NHVQCLQRQV EFLSMRLAAV HPSIDINLEN MFSAESGSLM  240
DCNFGGLVSS VDGQLNGSSH HQQQLWHTDA LPPQPLWGGE EVTPNFITPE NSLLSYDSSG  300
NSGCLHTNQL KMEL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57800.23e-74bHLH family protein