PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_024975887.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
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Family | LBD | ||||||||
Protein Properties | Length: 221aa MW: 24341.5 Da PI: 6.7695 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 124.3 | 6e-39 | 11 | 111 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 +C aCk+lrrkC++dC++apyf++eq p++fa++hk+FGasnv+kll+++ +r +++ +++yeA+ar+rdPvyG+v++i++lqqq+++l+a+l XP_024975887.1 11 PCGACKFLRRKCTADCIFAPYFCSEQgPARFAAIHKVFGASNVSKLLHHVAVADRCETVVTIAYEAQARIRDPVYGCVSHIFALQQQVACLQAQL 105 7*************************99******************************************************************* PP DUF260 95 allkee 100 ++k++ XP_024975887.1 106 MQVKAQ 111 999987 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 221 aa Download sequence |
MATVAGTTGS PCGACKFLRR KCTADCIFAP YFCSEQGPAR FAAIHKVFGA SNVSKLLHHV 60 AVADRCETVV TIAYEAQARI RDPVYGCVSH IFALQQQVAC LQAQLMQVKA QMAAQGYMDS 120 RNLENQWSAN MAAGAMAYQD YMNGTGNFMN CNISPQSSME SIDHNNEGNM GMQEIQSRDD 180 DHHHDHGFSF QPAAAVYSNK KRLSDSDLGE LQELAVRMMR N |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G42430.1 | 1e-59 | LBD family protein |