PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024975853.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family HSF
Protein Properties Length: 291aa    MW: 32656.5 Da    PI: 5.3035
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024975853.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind110.31.4e-34101012102
                     HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXX CS
    HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellek 96 
                     Fl k+y++++d+ ++e+isw+e+g  fvv+++ +fa+++Lp+ Fkh+nf+SFvRQLn+YgF+k+  ++         weF++++Fk+g+k+ll +
  XP_024975853.1  10 FLIKTYQLVDDPMTDEMISWNETGGGFVVWKTADFARDLLPNSFKHNNFSSFVRQLNTYGFHKTVPDK---------WEFANQYFKRGRKDLLIE 95 
                     9***************************************************************9999.........****************** PP

                     XXXXXX CS
    HSF_DNA-bind  97 ikrkks 102
                     i+r+k+
  XP_024975853.1  96 IHRRKT 101
                     ***986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 291 aa     Download sequence    
MVHRSSPAPF LIKTYQLVDD PMTDEMISWN ETGGGFVVWK TADFARDLLP NSFKHNNFSS  60
FVRQLNTYGF HKTVPDKWEF ANQYFKRGRK DLLIEIHRRK TVAPPKGKSD GAGDSASPPS  120
SSGDDLGSSS TSSPGSKNPG SVTPPLTVEE LENLSGENEK LKKEKQLLTS ELEQAKKQCD  180
DLVAFLCRCV KVAPEQIERI MSGSDVAVGE IATLENETNV DDDDDDDKDG DCFRLFGVLL  240
KDEKKKRGRD EEKETFGAQM KKMKVQGDFN NHTPWMKNLY SATEQYNKVC N
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36990.13e-59HSF family protein