PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024975848.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

ARR-B

Protein Properties

Length: 600aa MW: 65433.9 Da PI: 7.1501

Description

ARR-B family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024975848.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	89.7	2.6e-28	213	266	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kpr++W+ eLH++Fv+av+qL G++kA+Pk+ilelm+v+gLt+e+v+SHLQk+Rl XP_024975848.1 213 KPRVVWSVELHQQFVSAVNQL-GIDKAVPKRILELMNVPGLTRENVASHLQKFRL 266 79*****************.******************************8 PP
2	Myb_DNA-binding	40.4	6.7e-13	215	265	1	48
TSSS-HHHHHHHHHHHHHTTTT..-HHHHHHHHT.TTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg..tWktIartmg.kgRtlkqcksrwqkyl 48 r W+ e+++++v av+qlG + +k+I + m+ g+t++++ s++qk++ XP_024975848.1 215 RVVWSVELHQQFVSAVNQLGIDkaVPKRILELMNvPGLTRENVASHLQKFR 265 678**********************************************97 PP
3	Response_reg	79.3	1.3e-26	30	138	1	109
EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTT CS Response_reg 1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaG 93 vl+vdD+ + +++l+q+l++ y +v++++++++al+ll+e++ +D++l D+ mp+mdG++ll+ e++lp+i+++a g +++l+ ++ G XP_024975848.1 30 VLVVDDDVTCLKILEQMLRRCLY-HVTTCSQATAALNLLRERKgcFDVVLSDVHMPDMDGFKLLELVGL-EMDLPVIMMSADGRTNLVLRGIRHG 122 89*******************.************************************87754.558****************** PP ESEEEESS--HHHHHH CS Response_reg 94 akdflsKpfdpeelvk 109 a d+l Kp+ +e+l + XP_024975848.1 123 ACDYLIKPIREEQLKN 138 ***********987 PP

Sequence ? help Back to Top
Protein Sequence Length: 600 aa Download sequence
MTTGNSFGSG SLSCKPETGV SDQFPAGLRV LVVDDDVTCL KILEQMLRRC LYHVTTCSQA 60 TAALNLLRER KGCFDVVLSD VHMPDMDGFK LLELVGLEMD LPVIMMSADG RTNLVLRGIR 120 HGACDYLIKP IREEQLKNIW QHVIRKKWNE NKEHEHSGSV DDKDRHKRGD DTDYASSVND 180 GADGMLTSHK KRRNIKEEDD CELETDDPGA SKKPRVVWSV ELHQQFVSAV NQLGIDKAVP 240 KRILELMNVP GLTRENVASH LQKFRLYLKR LSGVAQQQGG GPNSFCGSIE QTPKLGPYGR 300 FEIQALAASG QIPPQTLAAL HAELLGRPIA NVGLPVLDHQ PLLQASKCMP VDHVMSYGHP 360 LPSNITKQIS QPVIEDVHSG LGAWHPNNMV GSYGGLGGQN GHNVLIGMLQ NQQLQKQSIT 420 VQPSRLVVPT QSSGFQVGNS GGSANQAASF NTSSVIDYSL VLPQSDRLSN GIGQRSERDT 480 TTTGCPSDSE NRTGCQVQSS VTNLSSKSSG EKQISFRGSG QVLDQGPLRN LGFVGKGTSI 540 PSRFAVYEAE PPIRNVNHED SSGRRVKQEP SIEFLETSKA GGIPITHRIS QNDLMSVFSD

Sequence ? help Back to Top

Protein Sequence Length: 600 aa Download sequence

MTTGNSFGSG SLSCKPETGV SDQFPAGLRV LVVDDDVTCL KILEQMLRRC LYHVTTCSQA  60
TAALNLLRER KGCFDVVLSD VHMPDMDGFK LLELVGLEMD LPVIMMSADG RTNLVLRGIR  120
HGACDYLIKP IREEQLKNIW QHVIRKKWNE NKEHEHSGSV DDKDRHKRGD DTDYASSVND  180
GADGMLTSHK KRRNIKEEDD CELETDDPGA SKKPRVVWSV ELHQQFVSAV NQLGIDKAVP  240
KRILELMNVP GLTRENVASH LQKFRLYLKR LSGVAQQQGG GPNSFCGSIE QTPKLGPYGR  300
FEIQALAASG QIPPQTLAAL HAELLGRPIA NVGLPVLDHQ PLLQASKCMP VDHVMSYGHP  360
LPSNITKQIS QPVIEDVHSG LGAWHPNNMV GSYGGLGGQN GHNVLIGMLQ NQQLQKQSIT  420
VQPSRLVVPT QSSGFQVGNS GGSANQAASF NTSSVIDYSL VLPQSDRLSN GIGQRSERDT  480
TTTGCPSDSE NRTGCQVQSS VTNLSSKSSG EKQISFRGSG QVLDQGPLRN LGFVGKGTSI  540
PSRFAVYEAE PPIRNVNHED SSGRRVKQEP SIEFLETSKA GGIPITHRIS QNDLMSVFSD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G16110.1	1e-124	ARR-B family protein