PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024975801.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family GRAS
Protein Properties Length: 749aa    MW: 82049 Da    PI: 6.3984
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024975801.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS421.85.6e-1293897482374
            GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshl 96 
                       lLl+cAeavs++++e+a+++L ++sel++p+g++ qR+aayf eA++arl++s+ ++y +lpp+++ ++  ++ ++a+++f+ +sP++kfsh+
  XP_024975801.1 389 LALLLQCAEAVSADNFEEANKMLLEISELSTPYGTSAQRVAAYFSEAMSARLMSSCLGIYTTLPPNAAVPQGLKKMTSAFQVFNGISPFVKFSHF 483
                     579******************************************************************************************** PP

            GRAS  97 taNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledlel 191
                     taNqaI ea+e+e+rvHiiD+di+qGlQWp L++ LasRp+gpp +R+Tg+g+    s ++le+tg+rL++fA++lg+pfef++ va+++ +l++
  XP_024975801.1 484 TANQAIQEAFEREDRVHIIDLDIMQGLQWPGLFHILASRPGGPPFVRLTGLGN----SLDTLEATGKRLSDFADKLGLPFEFSA-VADKVGNLNP 573
                     *****************************************************....9**************************.8********* PP

            GRAS 192 eeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvE 286
                     e+L+v+++Ea+aV++    h+l+d ++s ++    +L+++k+l Pkvv+vveq+++h ++sFl rf+ea++yysalfdsl +++++eseer++vE
  XP_024975801.1 574 ERLKVSKREAVAVHWLQ--HSLYDVTGSDTN----TLWFLKRLGPKVVTVVEQDLSH-AGSFLGRFVEAIHYYSALFDSLGSSYGEESEERHVVE 661
                     ****************9..999999999999....**********************.899********************************** PP

            GRAS 287 rellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                     ++ll++ei+nv+a  g +r  +++ +++Wre+le++GFk ++l  +aa+qa lll +++s+gy++ e++g+l lgWkd  L+++SaWr
  XP_024975801.1 662 QQLLSKEIRNVLAIGGPSRSGEMK-FNNWREKLEQCGFKGISLAGNAAAQATLLLGMFPSNGYTLVEDKGTLKLGWKDLCLLTASAWR 748
                     ******************999887.**************************************************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 749 aa     Download sequence    
MVRKRAASDM ELQTSAADHH YHHRLLRRLP PPASSTNPAP IDIHHLQETP DNDNHHLLSG  60
VPATPAALNV NTNDLPSNYS TMTLPSSSSS TNTSHVIMSS LSTTNYMMDS HSPPPPLCVF  120
SGLPLFPPTD HRNFNHHLSN TTTATGALPN HQLVTNNTAG AGMPFLTSED TVSATAWIDS  180
IIKDLIHSST EVSIPNLIQN VREIIHPCNP NLATLLEYRL RSLTDPPPNL VVDQQSGHDN  240
NNNNSNSNNN FNNRLLMRGK DQAQASSSMP PRNNPSTISG LEGMFLPDSQ QHLNNHGHLE  300
WGGVVTNTRK DDQFLNDDYN PSTGAPPAAL ISSSNNQEQL QESPPSQPPS ATDHNTAAAS  360
AQAAAMLLRE KKREEIRQQK RDEQGLHLLA LLLQCAEAVS ADNFEEANKM LLEISELSTP  420
YGTSAQRVAA YFSEAMSARL MSSCLGIYTT LPPNAAVPQG LKKMTSAFQV FNGISPFVKF  480
SHFTANQAIQ EAFEREDRVH IIDLDIMQGL QWPGLFHILA SRPGGPPFVR LTGLGNSLDT  540
LEATGKRLSD FADKLGLPFE FSAVADKVGN LNPERLKVSK REAVAVHWLQ HSLYDVTGSD  600
TNTLWFLKRL GPKVVTVVEQ DLSHAGSFLG RFVEAIHYYS ALFDSLGSSY GEESEERHVV  660
EQQLLSKEIR NVLAIGGPSR SGEMKFNNWR EKLEQCGFKG ISLAGNAAAQ ATLLLGMFPS  720
NGYTLVEDKG TLKLGWKDLC LLTASAWRP
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54220.10.0GRAS family protein