PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024975742.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

NAC

Protein Properties

Length: 610aa MW: 69170 Da PI: 5.1265

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024975742.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	182.6	9.8e-57	6	133	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 lppGfrFhPtdeelv +yLk+k++g+++el +vi+evd+yk+ePwdLp k + +++ ewyfFs+rd+ky++g+r+nratksgyWkatgkd++v XP_024975742.1 6 LPPGFRFHPTDEELVAYYLKRKINGHEIEL-QVIPEVDLYKCEPWDLPgKsLLPSKDLEWYFFSPRDRKYPNGSRTNRATKSGYWKATGKDRKVN 99 79**************************.99***********6434555777*********************************** PP NAM 94 skkgelvglkktLvfykgrapkgektdWvmheyrl 128 s +++++g+kktLv+y+grap+g++tdWvmheyrl XP_024975742.1 100 S-QSRAMGMKKTLVYYRGRAPHGSRTDWVMHEYRL 133 .9999**************************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 610 aa Download sequence
MAPVSLPPGF RFHPTDEELV AYYLKRKING HEIELQVIPE VDLYKCEPWD LPGKSLLPSK 60 DLEWYFFSPR DRKYPNGSRT NRATKSGYWK ATGKDRKVNS QSRAMGMKKT LVYYRGRAPH 120 GSRTDWVMHE YRLDERECET ASGLQLQDAY SLCRVFKKSL NAPKATTTGD RYATAASDHS 180 SCIDLYSDGG RGGEDMETCN YPTPPMASTI IHGSNGIISD RSDVKWTQYL SEDAFTFTNP 240 SFPNCGNLPY PPSKVDITLE CARLQHRLSL PPLQVQDFRH HGTSNYIENV PQSSNGPTMG 300 SQQDLLHEIL SVAQVSINQD EWVGSFAAGN DNDFSFLANN SNQMQDVGSF RFMGDDQNAR 360 SIEIGGLDEQ MEPDRMVENL RWVGMSTKDL EMAFLDDYKS VTVENTSSFQ REEQEVQVAE 420 ENLHNNNFTN NTDDHFSLEL LNQNQNDLHD NFLDDCDFST NNPTLETYEK TEISHGLLVS 480 TRQVSDTYFH RMVPSQTVKI QVNPGTLATH ETKQYKNSFE TVAGSSKVIN KSNSKETTTN 540 PLTNLVSLLL ICCIYPSMAD NYEEDDAIKM KKEQGSWRML KNVVIWPACV TLALAVSTIW 600 MHHNYLPNFS

Sequence ? help Back to Top

Protein Sequence Length: 610 aa Download sequence

MAPVSLPPGF RFHPTDEELV AYYLKRKING HEIELQVIPE VDLYKCEPWD LPGKSLLPSK  60
DLEWYFFSPR DRKYPNGSRT NRATKSGYWK ATGKDRKVNS QSRAMGMKKT LVYYRGRAPH  120
GSRTDWVMHE YRLDERECET ASGLQLQDAY SLCRVFKKSL NAPKATTTGD RYATAASDHS  180
SCIDLYSDGG RGGEDMETCN YPTPPMASTI IHGSNGIISD RSDVKWTQYL SEDAFTFTNP  240
SFPNCGNLPY PPSKVDITLE CARLQHRLSL PPLQVQDFRH HGTSNYIENV PQSSNGPTMG  300
SQQDLLHEIL SVAQVSINQD EWVGSFAAGN DNDFSFLANN SNQMQDVGSF RFMGDDQNAR  360
SIEIGGLDEQ MEPDRMVENL RWVGMSTKDL EMAFLDDYKS VTVENTSSFQ REEQEVQVAE  420
ENLHNNNFTN NTDDHFSLEL LNQNQNDLHD NFLDDCDFST NNPTLETYEK TEISHGLLVS  480
TRQVSDTYFH RMVPSQTVKI QVNPGTLATH ETKQYKNSFE TVAGSSKVIN KSNSKETTTN  540
PLTNLVSLLL ICCIYPSMAD NYEEDDAIKM KKEQGSWRML KNVVIWPACV TLALAVSTIW  600
MHHNYLPNFS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G65910.1	1e-146	NAC family protein