PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_024975713.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
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Family | C3H | ||||||||
Protein Properties | Length: 356aa MW: 38711.4 Da PI: 9.1429 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 36.9 | 5.9e-12 | 54 | 80 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++ C +++rtGtC yG++C+++H+p XP_024975713.1 54 PGMADCAYYMRTGTCGYGSKCRYNHPP 80 57899********************97 PP | |||||||
2 | zf-CCCH | 42 | 1.6e-13 | 102 | 128 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C++++rtGtCk+G++CkF+H++ XP_024975713.1 102 PGEPPCQYYLRTGTCKFGASCKFHHPR 128 5899*********************96 PP | |||||||
3 | zf-CCCH | 37.8 | 3.2e-12 | 149 | 174 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++C+++++tG+Ck+G +CkF+H++ XP_024975713.1 149 DEKECSYYLKTGQCKFGITCKFHHPQ 174 6789********************97 PP | |||||||
4 | zf-CCCH | 40.2 | 5.7e-13 | 301 | 327 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C+++++tG Ck+G++Ck++H+p XP_024975713.1 301 PGQPECQYYMKTGDCKFGASCKYHHPP 327 5789*********************97 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 356 aa Download sequence |
MELYGRSTGR NGSQPDHTQQ QSEWIQPGAE TGLEESMRRL GLWXGRGEFY PERPGMADCA 60 YYMRTGTCGY GSKCRYNHPP DRSSSAGGAA RSAGGGAYPE RPGEPPCQYY LRTGTCKFGA 120 SCKFHHPRHA GGSLSNVPLN TYGYPLRPDE KECSYYLKTG QCKFGITCKF HHPQPTGESM 180 PASARPFYSV QSPSAPSPEQ YVGPSAGYRV ARPPLVPGSY APGAYGPILL SPGMVPLQNW 240 SPYSGRVSPV LSPGAQPSMA AGSVYGVNSS APPFAAPYRP LPPSPGPLSS SQTERVFPER 300 PGQPECQYYM KTGDCKFGAS CKYHHPPDWV LSKANCVLSA IGLPLRPKLF NLWRHR |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G47850.1 | 1e-134 | C3H family protein |