PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_024975621.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
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Family | LBD | ||||||||
Protein Properties | Length: 231aa MW: 25679.1 Da PI: 7.9914 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 98.1 | 8.7e-31 | 2 | 101 | 1 | 95 |
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90 +C++C+vlr++C+++Cvl+p++ p++q+ ++ +v+k+FG++ ++++++a+p+++r+ +++sl++eA r+ +Pv+Gavg++++++++++q+ XP_024975621.1 2 SCNGCRVLRKGCSENCVLRPCLqwiqtPESQAYATVFVAKFFGRAGLMSFISAVPDNQRQSLFQSLLFEAAGRTVNPVNGAVGLLWTGNWHVCQA 96 6********************************************************************************************** PP DUF260 91 kaela 95 ++e+ XP_024975621.1 97 SVETI 101 99875 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 231 aa Download sequence |
MSCNGCRVLR KGCSENCVLR PCLQWIQTPE SQAYATVFVA KFFGRAGLMS FISAVPDNQR 60 QSLFQSLLFE AAGRTVNPVN GAVGLLWTGN WHVCQASVET ILRGGTLRPI PELLNGHPAT 120 PELGDSSETD VMCTDMFQLQ DPITHSRSKV QKRRRSYEPQ SSMTQLQDLD LNLNQSFLAK 180 KGKPEKQRLG SPSMNSEDSV TTTCLDAVFR DYNHNPRGRG DGEPQILNLF N |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 152 | 183 | KRRRSYEPQSSMTQLQDLDLNLNQSFLAKKGK |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G67420.1 | 1e-76 | LBD family protein |