PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024975609.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

LBD

Protein Properties

Length: 304aa MW: 33663.9 Da PI: 6.9838

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024975609.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	139.6	1e-43	7	104	1	98
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 +CaaCk+lrrkC+++Cv+apyfp +qp+kfanvhk+FGasnv k+l++l++++reda++sl+yeAear+rdPvyG+vg+i+ lq++l+q++++l+ XP_024975609.1 7 PCAACKFLRRKCTQECVFAPYFPPDQPQKFANVHKVFGASNVAKILNELNTTQREDAVNSLAYEAEARLRDPVYGCVGLISILQHRLKQVQSDLH 101 7********************************************************************************************99 PP DUF260 96 llk 98 +k XP_024975609.1 102 NAK 104 887 PP

Sequence ? help Back to Top
Protein Sequence Length: 304 aa Download sequence
MSSSNSPCAA CKFLRRKCTQ ECVFAPYFPP DQPQKFANVH KVFGASNVAK ILNELNTTQR 60 EDAVNSLAYE AEARLRDPVY GCVGLISILQ HRLKQVQSDL HNAKLELANY IGPSAMLPIL 120 NPGFIPQIPN MPSSSVPVLP YNMQPMMGMP GPGNFRDSQH HPQILEAQQQ QLVAVANPRE 180 QQDMLRNYEQ QQHPQQQPQQ QQQSSADLVR FSGGFEAPGG SGQVTGGGFC PMTAQAAMSP 240 SLALGSSYVN NMYQIQQQQP QQEQNHHLHH HLQPHQLLLP HESQQPPPAQ RAASEEDRNV 300 APSC

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G66870.1	2e-78	LBD family protein