PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024975574.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family LBD
Protein Properties Length: 295aa    MW: 32366 Da    PI: 6.3991
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024975574.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26097.21.7e-304107199
          DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90 
                     +C++C+vlr++C++dC ++p++     p++q++++ +++k++G++ +++l++a pe+ r+ +++sl+yeA+ r+ +P+yG+vg+++++++ql+q 
  XP_024975574.1   4 SCNGCRVLRKGCSDDCSIRPCLqwiksPESQANATVFLAKFYGRAGLMNLINAGPENLRPGIFRSLLYEACGRIVNPIYGSVGLLWSGRWQLCQN 98 
                     6********************************************************************************************** PP

          DUF260  91 kaelallke 99 
                     ++e++l ++
  XP_024975574.1  99 AVEAVLNGS 107
                     **9988766 PP
Sequence ? help Back to Top
Protein Sequence    Length: 295 aa     Download sequence    
MRMSCNGCRV LRKGCSDDCS IRPCLQWIKS PESQANATVF LAKFYGRAGL MNLINAGPEN  60
LRPGIFRSLL YEACGRIVNP IYGSVGLLWS GRWQLCQNAV EAVLNGSPIV QVASDTEETN  120
NGPPLKAYDI RHISKDENSG GSNELHRIRT RCRFKRSASK GKAKDNRVWV GSCEEVSGHD  180
EINNRSSSHE STLSHQSEAA HVAEGESHET AEESLVSVET AEGSAAAPVK IERDESATIQ  240
DNNDEIGLEL TLGYEPVRRS RSRSRSPQNV QKLTGASDNS GEAIYRMELG LDYPV
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02550.12e-91LBD family protein