PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_024975561.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
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Family | LBD | ||||||||
Protein Properties | Length: 256aa MW: 27491 Da PI: 8.7728 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 133.1 | 1.1e-41 | 52 | 151 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 +CaaCk+lrr+Ca++C+++pyf ++p+kfa+vhk+FGasnv+kll ++pe++r da++slvyeA++r+rdP+yG++g i++lqqq+++l+a+l+ XP_024975561.1 52 PCAACKLLRRRCAEECPFSPYFSPHEPHKFAAVHKIFGASNVSKLLMEVPESQRADAANSLVYEANVRLRDPIYGCMGAISALQQQIQSLQADLN 146 7********************************************************************************************** PP DUF260 96 llkee 100 ++++e XP_024975561.1 147 AVRSE 151 *9987 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 256 aa Download sequence |
MSREREVYDD AGKRIKREVL DAYINNKTTT SMGRRQILMP AAAAGSLNSI TPCAACKLLR 60 RRCAEECPFS PYFSPHEPHK FAAVHKIFGA SNVSKLLMEV PESQRADAAN SLVYEANVRL 120 RDPIYGCMGA ISALQQQIQS LQADLNAVRS EILRYKYREV AAAAANSTHH DINNIIIAST 180 LASSCHIGIT AAQLSTIQAP PTPPPPPQPS IVISSSSSSS SSSSSSSSVH LYGIPSSTSG 240 YSTSTIPNNN VSSYFA |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G40470.1 | 1e-72 | LBD family protein |