PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024975561.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family LBD
Protein Properties Length: 256aa    MW: 27491 Da    PI: 8.7728
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024975561.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260133.11.1e-41521511100
          DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 
                     +CaaCk+lrr+Ca++C+++pyf  ++p+kfa+vhk+FGasnv+kll ++pe++r da++slvyeA++r+rdP+yG++g i++lqqq+++l+a+l+
  XP_024975561.1  52 PCAACKLLRRRCAEECPFSPYFSPHEPHKFAAVHKIFGASNVSKLLMEVPESQRADAANSLVYEANVRLRDPIYGCMGAISALQQQIQSLQADLN 146
                     7********************************************************************************************** PP

          DUF260  96 llkee 100
                     ++++e
  XP_024975561.1 147 AVRSE 151
                     *9987 PP

Sequence ? help Back to Top
Protein Sequence    Length: 256 aa     Download sequence    
MSREREVYDD AGKRIKREVL DAYINNKTTT SMGRRQILMP AAAAGSLNSI TPCAACKLLR  60
RRCAEECPFS PYFSPHEPHK FAAVHKIFGA SNVSKLLMEV PESQRADAAN SLVYEANVRL  120
RDPIYGCMGA ISALQQQIQS LQADLNAVRS EILRYKYREV AAAAANSTHH DINNIIIAST  180
LASSCHIGIT AAQLSTIQAP PTPPPPPQPS IVISSSSSSS SSSSSSSSVH LYGIPSSTSG  240
YSTSTIPNNN VSSYFA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40470.11e-72LBD family protein