PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024975551.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

bHLH

Protein Properties

Length: 238aa MW: 26895.7 Da PI: 8.1136

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024975551.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	37	5.9e-12	69	114	4	54
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 +h+e+E+rRR+riN +++Lr+llP + K +Ka+ L k++e +k+L XP_024975551.1 69 NHKEAEKRRRERINFHLNRLRTLLPCN-----SKTDKASLLAKVIERLKEL 114 8***********************8.....7*************998 PP

Sequence ? help Back to Top
Protein Sequence Length: 238 aa Download sequence
MHSHLYHRSA TDTTTGNRHL PPQMLLSGCT TTSNHDSSLL LDHYPCHESV TADSSPPSRS 60 LSSSSASINH KEAEKRRRER INFHLNRLRT LLPCNSKTDK ASLLAKVIER LKELKQITSE 120 IEQLESFPSE KDEITVISLN NDEGNGRIVI KASMCCENRS DLLTDMIQTL KSLQLRPLRM 180 EMVAMGGRIR NIILVECDCE RDDSGELVYC LKEALSCLVK SNLDSNQSSK RRRMIGCR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G56770.1	2e-44	bHLH family protein