PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_024975526.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
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Family | LBD | ||||||||
Protein Properties | Length: 234aa MW: 26094.5 Da PI: 6.1581 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 125.4 | 2.7e-39 | 7 | 107 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 +C aCk+lrrkC ++Cv+apyf++eq + +fa++h++FGasnv+kll++lp +r++a+ +++yeA+ar++dP+yG+v++i++lqqq+ +l+++l XP_024975526.1 7 PCGACKFLRRKCIRGCVFAPYFCHEQgATHFAAIHRVFGASNVSKLLAHLPVGDRSEAAVTIAYEAQARLQDPIYGCVSHIFALQQQVVSLQTQL 101 7*************************89******************************************************************* PP DUF260 95 allkee 100 a+lke+ XP_024975526.1 102 ASLKEQ 107 *99987 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 234 aa Download sequence |
MTGSGSPCGA CKFLRRKCIR GCVFAPYFCH EQGATHFAAI HRVFGASNVS KLLAHLPVGD 60 RSEAAVTIAY EAQARLQDPI YGCVSHIFAL QQQVVSLQTQ LASLKEQAAQ RHQGVSSMSN 120 SDNPTNGRYT SSYPQTQDFK NWFQQSDQNS CMNMPQFDPN SMNHDHVMNF KSMAENYENS 180 XPKEEDGSFS SFEEGSSYSI DSLDMQVSSS NQQQWGFRDH GEDLQSVAFG YIHN |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G58190.1 | 5e-57 | LBD family protein |