PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024975520.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

bHLH

Protein Properties

Length: 349aa MW: 39393.9 Da PI: 4.635

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024975520.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	35.5	1.8e-11	182	225	6	54
HHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 ++ErrRR+r+N++++ Lr+++P + K++ +iL ++eY+k+L XP_024975520.1 182 LMAERRRRKRLNDRLSMLRSIVPRiS------KMDRTSILGDTIEYMKDL 225 589*******************66......**************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 349 aa Download sequence
MMQHPSSQPQ GLLEDLLTPI KQSLTTFPNV DPGLFWDTSY NEEDDSLLAS SSSSFLQLIS 60 SSIEPSFQCS SYTGETVDFP AVLPNLDSFT PGNVSNSSSY GQQVCEYEYE YEHEYENDAK 120 VRSMVSVQEG YPTMVTQEDV DGDDKIHEEQ QRVVSDNQIP VVFRSGEKKR SKKVEGQPSK 180 NLMAERRRRK RLNDRLSMLR SIVPRISKMD RTSILGDTIE YMKDLLEKIH NFQDHDMGSD 240 LNSLNLMGSF KDSKTNEVQA RNPPKFEVER RNNDTRIQIC CSSKPGLLVS TLNTLEALGL 300 DIQQCVISSF SDFSLQASCS EAQENRAITS SEDIKQILFR NAGYGGRCL

Sequence ? help Back to Top

Protein Sequence Length: 349 aa Download sequence

MMQHPSSQPQ GLLEDLLTPI KQSLTTFPNV DPGLFWDTSY NEEDDSLLAS SSSSFLQLIS  60
SSIEPSFQCS SYTGETVDFP AVLPNLDSFT PGNVSNSSSY GQQVCEYEYE YEHEYENDAK  120
VRSMVSVQEG YPTMVTQEDV DGDDKIHEEQ QRVVSDNQIP VVFRSGEKKR SKKVEGQPSK  180
NLMAERRRRK RLNDRLSMLR SIVPRISKMD RTSILGDTIE YMKDLLEKIH NFQDHDMGSD  240
LNSLNLMGSF KDSKTNEVQA RNPPKFEVER RNNDTRIQIC CSSKPGLLVS TLNTLEALGL  300
DIQQCVISSF SDFSLQASCS EAQENRAITS SEDIKQILFR NAGYGGRCL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	168	190	KKRSKKVEGQPSKNLMAERRRRK
2	185	192	ERRRRKRL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G65640.1	4e-82	bHLH family protein