PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_024975497.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 207aa MW: 23920.1 Da PI: 6.3088 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 62.3 | 7.5e-20 | 54 | 107 | 3 | 56 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k++++++eq++ Le+ F +++++ e++ +LA++lgL+ rqV vWFqNrRa++k XP_024975497.1 54 KKRKLSDEQVNLLEQNFGNEHKLESERKDRLASELGLDPRQVAVWFQNRRARWK 107 45689************************************************9 PP | |||||||
2 | HD-ZIP_I/II | 121.4 | 4.6e-39 | 54 | 145 | 2 | 93 |
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 kkr+ls+eqv+lLE++F +e+kLe+erK +la+eLgl+prqvavWFqnrRAR+k+k+lE++y++Lk+++d+ + e++rLe+ev +L+e+l+e XP_024975497.1 54 KKRKLSDEQVNLLEQNFGNEHKLESERKDRLASELGLDPRQVAVWFQNRRARWKSKKLEEEYSKLKSEHDSTVLEKCRLETEVLKLKEQLSE 145 9****************************************************************************************986 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 207 aa Download sequence |
MTTNMKTQAD DQMVLLSQYY PGIYDQLMPE QGEVVKPRRR RKKSKTDGGS SGMKKRKLSD 60 EQVNLLEQNF GNEHKLESER KDRLASELGL DPRQVAVWFQ NRRARWKSKK LEEEYSKLKS 120 EHDSTVLEKC RLETEVLKLK EQLSEAEKEI NRLVERSDGI SSTSPSSSFS MEAMEPPFLG 180 GFGMEGLENV FCLPENNYIH GLDWLNI |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 38 | 57 | RRRRKKSKTDGGSSGMKKRK |
2 | 39 | 58 | RRRRKKSKTDGGSSGMKKRK |
3 | 40 | 59 | RRRRKKSKTDGGSSGMKKRK |
4 | 41 | 60 | RRRRKKSKTDGGSSGMKKRK |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G36740.1 | 5e-57 | HD-ZIP family protein |