PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024975474.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

G2-like

Protein Properties

Length: 354aa MW: 40442.5 Da PI: 7.0306

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024975474.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	98.2	5.6e-31	73	126	2	55
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 prlrWtpeLH Fv+ave+LGG+e+AtPk +l+lm++kgL+++hvkSHLQ+YR+ XP_024975474.1 73 PRLRWTPELHLIFVRAVERLGGQERATPKLVLQLMNMKGLSIAHVKSHLQMYRS 126 8****************************************************7 PP
2	Myb_DNA-binding	54.4	2.8e-17	74	125	1	48
TSSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHT.TTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg...tWktIartmg.kgRtlkqcksrwqkyl 48 r+rWT+e+++++v+av++lGg t+k++ + m+ kg++ ++ks++q+y+ XP_024975474.1 74 RLRWTPELHLIFVRAVERLGGQeraTPKLVLQLMNmKGLSIAHVKSHLQMYR 125 89************************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 354 aa Download sequence
MIMEDGDCDC DGSDMNDHHD HLCCRKLDQD DDLDGNKITK SNESSGNNSM VDQVDQKLEA 60 SGRVRQYVRS KMPRLRWTPE LHLIFVRAVE RLGGQERATP KLVLQLMNMK GLSIAHVKSH 120 LQMYRSKKID DQGQVINEGD YCAGRNNHHL NSFWQLPMFN PRLFRPDPRN YEPHLISRPW 180 RNNTSATMAD HHGLIIGNGA YCTSKKLKNS SMEEQNYTIA HPEYEDEQAR LMQEWVVKQA 240 LITNTRSTLV GHQPINSQRF DNPIQTKKRK AAADVNGDLD LNLSLSMKVI RQEETAADEE 300 ETVDSSLSLS LFPSSPKKEK PVRDPQAQSR FSWLLEDHKG AKNPRLASTL DLTI

Sequence ? help Back to Top

Protein Sequence Length: 354 aa Download sequence

MIMEDGDCDC DGSDMNDHHD HLCCRKLDQD DDLDGNKITK SNESSGNNSM VDQVDQKLEA  60
SGRVRQYVRS KMPRLRWTPE LHLIFVRAVE RLGGQERATP KLVLQLMNMK GLSIAHVKSH  120
LQMYRSKKID DQGQVINEGD YCAGRNNHHL NSFWQLPMFN PRLFRPDPRN YEPHLISRPW  180
RNNTSATMAD HHGLIIGNGA YCTSKKLKNS SMEEQNYTIA HPEYEDEQAR LMQEWVVKQA  240
LITNTRSTLV GHQPINSQRF DNPIQTKKRK AAADVNGDLD LNLSLSMKVI RQEETAADEE  300
ETVDSSLSLS LFPSSPKKEK PVRDPQAQSR FSWLLEDHKG AKNPRLASTL DLTI

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G38300.1	2e-42	G2-like family protein