PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_024975459.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
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Family | bHLH | ||||||||
Protein Properties | Length: 465aa MW: 51088.3 Da PI: 7.5034 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 28.5 | 2.7e-09 | 334 | 381 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L+ l+P++ +k Ka +L + ++Y++sLq XP_024975459.1 334 SHSLAERVRREKISERMKLLQNLVPNC----NKVTGKAPMLDEIINYVQSLQ 381 8*************************9....677*****************9 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 465 aa Download sequence |
MDRDFFLNAG LQFPASQPAW KLMTLMPEMN FPVDQSSADG VCGPNWEKPD QYSHFESALN 60 SMVSSPVSGS TVSTDIMAVR ELIGKLGSIR SGCGSLSQAA MTAAVPPSSS PLNSSPPPKL 120 NLPIMDHFVK ESIPIIGNSM PLNQNLPLIA ADPGFAERAA KFSCFGSRSF NGRTNELGLN 180 RNNPEFQLGS SVSPMTGNLK FPRVSSSPAL RIDRSPVGFE DCKKNSEESN MKSMCLDKKF 240 SRFSSSAANS NEESSVSEQI PSGEFGFKNQ KDSNSRKRKG GSTKKEEDAI GDSNAKRSKK 300 PLENGGKTEE NTKAIEAPKD YIHVRARRGQ ATDSHSLAER VRREKISERM KLLQNLVPNC 360 NKVTGKAPML DEIINYVQSL QKQVEFLSMK LATVNPSLDF DTININQSNN NHSHQIQSTF 420 YNQNPQTIFN GSVHEFTEPF PQFPGFGQDD LQSIVQMGFG ENVDL |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G07340.1 | 6e-72 | bHLH family protein |