PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_024975344.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 252aa MW: 28399.6 Da PI: 6.1544 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 57.9 | 1.7e-18 | 40 | 93 | 3 | 56 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k+++++ eq+++Le+ Fe +++ e++++LA+ lgL+ rqV +WFqNrRa++k XP_024975344.1 40 KKRRLNLEQVKALEKSFELGNKLEPERKTQLARALGLQPRQVAIWFQNRRARWK 93 4557899**********************************************9 PP | |||||||
2 | HD-ZIP_I/II | 128.7 | 2.4e-41 | 39 | 129 | 1 | 91 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 ekkrrl+ eqvk+LE+sFe +kLeperK++lar+Lglqprqva+WFqnrRAR+ktkqlEkdy++Lkr+++++k++n++L++ +++L++el XP_024975344.1 39 EKKRRLNLEQVKALEKSFELGNKLEPERKTQLARALGLQPRQVAIWFQNRRARWKTKQLEKDYDVLKRQFESVKADNDALKNLNKKLHAEL 129 69**************************************************************************************998 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 252 aa Download sequence |
MRRSMSYSGM ERCEETRAGG GGGGADDDMS EDDGSQLGEK KRRLNLEQVK ALEKSFELGN 60 KLEPERKTQL ARALGLQPRQ VAIWFQNRRA RWKTKQLEKD YDVLKRQFES VKADNDALKN 120 LNKKLHAELL AVKGGESNGI RPINLNKETE GSWSNGSENS CDLNTVTGTM TPSEESPIFY 180 TQISNNIYPN MTSSIGPNSG LTQLLQNPST TDLLNQRLNQ TVGNESFCNM FNAIEDQPAF 240 WPWPEQHPQH LH |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 88 | 96 | RRARWKTKQ |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69780.1 | 2e-68 | HD-ZIP family protein |