PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_024975343.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 282aa MW: 31911.5 Da PI: 5.4221 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 57.7 | 2e-18 | 70 | 123 | 3 | 56 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k+++++ eq+++Le+ Fe +++ e++++LA+ lgL+ rqV +WFqNrRa++k XP_024975343.1 70 KKRRLNLEQVKALEKSFELGNKLEPERKTQLARALGLQPRQVAIWFQNRRARWK 123 4557899**********************************************9 PP | |||||||
2 | HD-ZIP_I/II | 128.4 | 3e-41 | 69 | 159 | 1 | 91 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 ekkrrl+ eqvk+LE+sFe +kLeperK++lar+Lglqprqva+WFqnrRAR+ktkqlEkdy++Lkr+++++k++n++L++ +++L++el XP_024975343.1 69 EKKRRLNLEQVKALEKSFELGNKLEPERKTQLARALGLQPRQVAIWFQNRRARWKTKQLEKDYDVLKRQFESVKADNDALKNLNKKLHAEL 159 69**************************************************************************************998 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 282 aa Download sequence |
MSFLPPEPMF FGYEDDHHPP HDFQGVQTLL MRRSMSYSGM ERCEETRAGG GGGGADDDMS 60 EDDGSQLGEK KRRLNLEQVK ALEKSFELGN KLEPERKTQL ARALGLQPRQ VAIWFQNRRA 120 RWKTKQLEKD YDVLKRQFES VKADNDALKN LNKKLHAELL AVKGGESNGI RPINLNKETE 180 GSWSNGSENS CDLNTVTGTM TPSEESPIFY TQISNNIYPN MTSSIGPNSG LTQLLQNPST 240 TDLLNQRLNQ TVGNESFCNM FNAIEDQPAF WPWPEQHPQH LH |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 118 | 126 | RRARWKTKQ |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69780.1 | 4e-70 | HD-ZIP family protein |