PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024975343.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family HD-ZIP
Protein Properties Length: 282aa    MW: 31911.5 Da    PI: 5.4221
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024975343.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox57.72e-1870123356
                     --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                     k+++++ eq+++Le+ Fe  +++  e++++LA+ lgL+ rqV +WFqNrRa++k
  XP_024975343.1  70 KKRRLNLEQVKALEKSFELGNKLEPERKTQLARALGLQPRQVAIWFQNRRARWK 123
                     4557899**********************************************9 PP

2HD-ZIP_I/II128.43e-4169159191
     HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 
                     ekkrrl+ eqvk+LE+sFe  +kLeperK++lar+Lglqprqva+WFqnrRAR+ktkqlEkdy++Lkr+++++k++n++L++ +++L++el
  XP_024975343.1  69 EKKRRLNLEQVKALEKSFELGNKLEPERKTQLARALGLQPRQVAIWFQNRRARWKTKQLEKDYDVLKRQFESVKADNDALKNLNKKLHAEL 159
                     69**************************************************************************************998 PP

Sequence ? help Back to Top
Protein Sequence    Length: 282 aa     Download sequence    
MSFLPPEPMF FGYEDDHHPP HDFQGVQTLL MRRSMSYSGM ERCEETRAGG GGGGADDDMS  60
EDDGSQLGEK KRRLNLEQVK ALEKSFELGN KLEPERKTQL ARALGLQPRQ VAIWFQNRRA  120
RWKTKQLEKD YDVLKRQFES VKADNDALKN LNKKLHAELL AVKGGESNGI RPINLNKETE  180
GSWSNGSENS CDLNTVTGTM TPSEESPIFY TQISNNIYPN MTSSIGPNSG LTQLLQNPST  240
TDLLNQRLNQ TVGNESFCNM FNAIEDQPAF WPWPEQHPQH LH
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1118126RRARWKTKQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69780.14e-70HD-ZIP family protein