PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024975318.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family bHLH
Protein Properties Length: 320aa    MW: 35457.7 Da    PI: 5.8111
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024975318.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH37.34.9e-124482244
                    HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHH CS
             HLH  2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiL 44
                    r +h+e E+rRR++iN++f+ Lr+l+P++    ++K + a+ L
  XP_024975318.1 44 RSKHSETEQRRRSKINERFQILRDLIPQN----DQKRDRASFL 82
                    899*************************8....6777777766 PP
Sequence ? help Back to Top
Protein Sequence    Length: 320 aa     Download sequence    
MVRTVKNHHH QEEEEDDEDF ISRTTDGSSQ KDGRRNDQKA SSHRSKHSET EQRRRSKINE  60
RFQILRDLIP QNDQKRDRAS FLLEVYEGAY QGWSPEPTKL MPWRGNCGAD NFADQSPPIK  120
NGSVDEGNIV FAPALLTNVQ NLVESDLNGS AGFKATDHGA ARAVSMDVPL QQNTFEAEPT  180
HTSQGSFPDV ELLASQSRTQ PWNARPVSSE GAIQSCTPSE MEELKMQREE ASISNAYSKG  240
LLNNLTQALG SSGVDLSQAC ISVQFDIRKR ASSGATSTSF SVKDHDFLSP GNQATTHCAV  300
RNGDDVCNQA HKRPRTEQNQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69010.16e-49bHLH family protein