PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024975317.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family bHLH
Protein Properties Length: 333aa    MW: 37089.7 Da    PI: 5.815
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024975317.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH50.53.8e-164493255
                    HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH  2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                    r +h+e E+rRR++iN++f+ Lr+l+P++    ++K + a+ L ++++YI+ Lq
  XP_024975317.1 44 RSKHSETEQRRRSKINERFQILRDLIPQN----DQKRDRASFLLEVIQYIQFLQ 93
                    899*************************9....9*******************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 333 aa     Download sequence    
MVRTVKNHHH QEEEEDDEDF ISRTTDGSSQ KDGRRNDQKA SSHRSKHSET EQRRRSKINE  60
RFQILRDLIP QNDQKRDRAS FLLEVIQYIQ FLQEKLQVYE GAYQGWSPEP TKLMPWRGNC  120
GADNFADQSP PIKNGSVDEG NIVFAPALLT NVQNLVESDL NGSAGFKATD HGAARAVSMD  180
VPLQQNTFEA EPTHTSQGSF PDVELLASQS RTQPWNARPV SSEGAIQSCT PSEMEELKMQ  240
REEASISNAY SKGLLNNLTQ ALGSSGVDLS QACISVQFDI RKRASSGATS TSFSVKDHDF  300
LSPGNQATTH CAVRNGDDVC NQAHKRPRTE QNQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69010.12e-59bHLH family protein