PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024975196.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family B3
Protein Properties Length: 322aa    MW: 35882 Da    PI: 7.4905
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024975196.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B350.92.8e-16111207194
                     EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS.-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesg.rsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                     f k+l +sdv+ ++r+vlpkk ae+h   ++ +e++ l + d +g  +W +k+++  +++s++yvl+ G+ eF+++++L+ gD +++++d+  + 
  XP_024975196.1 111 FSKKLQKSDVGVLKRIVLPKKPAETHlpALIAKEGIILEMDDMDGmHVWCFKFRFwpNNNSRMYVLE-GTGEFAEEHELQLGDYIMLYRDS-VNL 203
                     889*************************8888999*******9988*******9989999999***9.********************554.555 PP

                     ..EE CS
              B3  91 elvv 94 
                     ++v+
  XP_024975196.1 204 NYVI 207
                     5555 PP
Sequence ? help Back to Top
Protein Sequence    Length: 322 aa     Download sequence    
MERNEACALR AFAGFDIGLG INFGGVQDNT YKTKKPAAAA AAAATATATD RDLVAAARFD  60
FLKKKRMPRF RRGASAALRS FRPFTTPLSS TVSSSSFVGP IVDQGRLTFL FSKKLQKSDV  120
GVLKRIVLPK KPAETHLPAL IAKEGIILEM DDMDGMHVWC FKFRFWPNNN SRMYVLEGTG  180
EFAEEHELQL GDYIMLYRDS VNLNYVIQAV KAYEVEEYAK KEVKANLGSQ GKSGKPQPNN  240
GVLMNQNWPW GGLEVEVLNP TNYPMNASTV EDQMGMTFIY DTSYSNDTLT PLDFLGGFMT  300
SYPTVQPNFA IENLSIDDLY KI
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G26790.12e-45B3 family protein