PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024975195.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family B3
Protein Properties Length: 313aa    MW: 35034.1 Da    PI: 7.4905
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024975195.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3512.7e-16102198194
                     EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS.-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesg.rsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                     f k+l +sdv+ ++r+vlpkk ae+h   ++ +e++ l + d +g  +W +k+++  +++s++yvl+ G+ eF+++++L+ gD +++++d+  + 
  XP_024975195.1 102 FSKKLQKSDVGVLKRIVLPKKPAETHlpALIAKEGIILEMDDMDGmHVWCFKFRFwpNNNSRMYVLE-GTGEFAEEHELQLGDYIMLYRDS-VNL 194
                     889*************************8888999*******9988*******9989999999***9.********************554.555 PP

                     ..EE CS
              B3  91 elvv 94 
                     ++v+
  XP_024975195.1 195 NYVI 198
                     5555 PP
Sequence ? help Back to Top
Protein Sequence    Length: 313 aa     Download sequence    
MERNEACALR AFAGFDIGLG INFGGVQDNT YKTKKPAAAA AAAATATATD RDLVAAARFD  60
FLKKKRMPRF RRGASAALRS FRPFTTPLSS TIVDQGRLTF LFSKKLQKSD VGVLKRIVLP  120
KKPAETHLPA LIAKEGIILE MDDMDGMHVW CFKFRFWPNN NSRMYVLEGT GEFAEEHELQ  180
LGDYIMLYRD SVNLNYVIQA VKAYEVEEYA KKEVKANLGS QGKSGKPQPN NGVLMNQNWP  240
WGGLEVEVLN PTNYPMNAST VEDQMGMTFI YDTSYSNDTL TPLDFLGGFM TSYPTVQPNF  300
AIENLSIDDL YKI
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G26790.11e-49B3 family protein