PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024975192.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family MIKC_MADS
Protein Properties Length: 233aa    MW: 26745.6 Da    PI: 7.4606
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024975192.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF885.1e-281059251
                    ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                    ri+n++ rqvtfskRrng+lKKA+EL +LCda+v viifsst+klye+ss
  XP_024975192.1 10 RIDNSTSRQVTFSKRRNGLLKKAKELAILCDADVGVIIFSSTNKLYEFSS 59
                    8***********************************************96 PP
2K-box67.35.1e-23841711299
           K-box  12 akaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 
                     ++ + +q e+  Lk++++nL +++R+l+Ge+L  L l++Lq+Le+qL  sl+ iR kK+e l+++i+el +k + +++en +L kk+ 
  XP_024975192.1  84 SDVKLWQMEAGLLKQQLQNLHETHRQLMGEELCGLGLEDLQKLENQLSLSLQVIRMKKEESLTNEIQELTRKGNLIHQENIELYKKIY 171
                     66788********************************************************************************985 PP
Sequence ? help Back to Top
Protein Sequence    Length: 233 aa     Download sequence    
MGRGKIAIRR IDNSTSRQVT FSKRRNGLLK KAKELAILCD ADVGVIIFSS TNKLYEFSST  60
SMKSVVQRYN RSKEEINQLV NPMSDVKLWQ MEAGLLKQQL QNLHETHRQL MGEELCGLGL  120
EDLQKLENQL SLSLQVIRMK KEESLTNEIQ ELTRKGNLIH QENIELYKKI YEARTYATNF  180
DENNGFEACN SGVIQAHSPT NLHLCQPEDQ SMLDIPLRET ISRWNDCMID AGK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37940.13e-76MIKC_MADS family protein