PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024975154.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

bHLH

Protein Properties

Length: 355aa MW: 38839.8 Da PI: 5.9259

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024975154.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	51.1	2.4e-16	153	199	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 hn ErrRRdriN+++ L+el+P + K +Ka++L +A+eY+ksLq XP_024975154.1 153 VHNLSERRRRDRINEKMKALQELIPRC-----NKSDKASMLDEAIEYLKSLQ 199 6***********************8.....6****************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 355 aa Download sequence
MPKKSTMGGD EDIMELLWQN GQVVMQSQNQ RSVGNKKPEI RTSMANREIR SSVVEEETGP 60 SDLFMQEDEM SSWLHYPMDE NSLEGCLYSG SGASASVEPS SQKPPPTTDD RKRKGRDTDD 120 TECHSEDVEF EYTDAKKQSH GATSTKRSRA AEVHNLSERR RRDRINEKMK ALQELIPRCN 180 KSDKASMLDE AIEYLKSLQM QVQMMSMGCS MVPMMFPGVQ QYMSPMAMGM GMNHAMVPYP 240 SILPGSSLPN PAAAVAAAAA TQLGPRFPVP GFNMPPPVTI TGGPAASQAA NLSAPMMSSF 300 PSHNQNQPQA PNFSDPFQQY LGLHPTQIPL PQNQGGMPPI ATKPSSSKDP TNQSG

Sequence ? help Back to Top

Protein Sequence Length: 355 aa Download sequence

MPKKSTMGGD EDIMELLWQN GQVVMQSQNQ RSVGNKKPEI RTSMANREIR SSVVEEETGP  60
SDLFMQEDEM SSWLHYPMDE NSLEGCLYSG SGASASVEPS SQKPPPTTDD RKRKGRDTDD  120
TECHSEDVEF EYTDAKKQSH GATSTKRSRA AEVHNLSERR RRDRINEKMK ALQELIPRCN  180
KSDKASMLDE AIEYLKSLQM QVQMMSMGCS MVPMMFPGVQ QYMSPMAMGM GMNHAMVPYP  240
SILPGSSLPN PAAAVAAAAA TQLGPRFPVP GFNMPPPVTI TGGPAASQAA NLSAPMMSSF  300
PSHNQNQPQA PNFSDPFQQY LGLHPTQIPL PQNQGGMPPI ATKPSSSKDP TNQSG

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	158	163	ERRRRD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G20180.1	3e-48	bHLH family protein