PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024975140.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

AP2

Protein Properties

Length: 638aa MW: 70168.1 Da PI: 6.7969

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024975140.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	51	3.6e-16	310	369	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++gr++A+++d ++ g ++ ++++lg ++ +e+Aa+a++ a++k++g XP_024975140.1 310 SQYRGVTRHRWTGRYEAHLWDnSCKkEGqsRKgRQVYLGGYDMEEKAARAYDLAALKYWG 369 78*****************988886678446***********************98 PP
2	AP2	47	6.4e-15	412	463	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s y+GV+++++ grW A+I + +k +lg+f t eeAa+a++ a+ k++g XP_024975140.1 412 SVYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDVAAIKFRG 463 78**************988532...5**********************997 PP

Sequence ? help Back to Top
Protein Sequence Length: 638 aa Download sequence
MKSVINNNGN NGNNDNNKNS NNWLGFSLSP HMNTSSTTST MEGSPPSDAA TQPSSSNPTT 60 YFNLPSHFNY PNIYCSGVES ENASGLYSAF PIMPLKSDGS LCLMEAITRS QSQGMVSSTP 120 PKLENFFGGV TMGTPDFDRG GATMALGLDS STMYYNQNPD HETLQHNHRH QQHQIQPQHY 180 PDYSGFRALY QTVQQEEVKE AQIAADSCNL HLPSIGEDDD INSMKNWISR NYHSGIGGGD 240 HGGGGGYGDL QSLSLSMSFG CSQSQQQIIP PANVTDCVVL DSKKRGSEKV DQQKQIVHRK 300 SLDTFGQRTS QYRGVTRHRW TGRYEAHLWD NSCKKEGQSR KGRQVYLGGY DMEEKAARAY 360 DLAALKYWGP ATHINFPLEN YEQEVVEMKN MSRQEYVAHL RRRSSGFSRG ASVYRGVTRH 420 HQHGRWQARI GRVAGNKDLY LGTFSTQEEA AEAYDVAAIK FRGINAVTNF DISRYNVEKI 480 IASNTLLAGE LARRTKEVEP SNDLLSDQIT QNGDQPNTTT AATTTTTTAN ATATTNMLDW 540 KMALYDQNAT TGTGLEGDDQ SSKLGTHLSN ASSLVTSLSS SREDSPERNN NLPMILGTPP 600 SASKFLGNSN SNSSGTWIPT GTTQLRPHIP VFAAWTDA

Sequence ? help Back to Top

Protein Sequence Length: 638 aa Download sequence

MKSVINNNGN NGNNDNNKNS NNWLGFSLSP HMNTSSTTST MEGSPPSDAA TQPSSSNPTT  60
YFNLPSHFNY PNIYCSGVES ENASGLYSAF PIMPLKSDGS LCLMEAITRS QSQGMVSSTP  120
PKLENFFGGV TMGTPDFDRG GATMALGLDS STMYYNQNPD HETLQHNHRH QQHQIQPQHY  180
PDYSGFRALY QTVQQEEVKE AQIAADSCNL HLPSIGEDDD INSMKNWISR NYHSGIGGGD  240
HGGGGGYGDL QSLSLSMSFG CSQSQQQIIP PANVTDCVVL DSKKRGSEKV DQQKQIVHRK  300
SLDTFGQRTS QYRGVTRHRW TGRYEAHLWD NSCKKEGQSR KGRQVYLGGY DMEEKAARAY  360
DLAALKYWGP ATHINFPLEN YEQEVVEMKN MSRQEYVAHL RRRSSGFSRG ASVYRGVTRH  420
HQHGRWQARI GRVAGNKDLY LGTFSTQEEA AEAYDVAAIK FRGINAVTNF DISRYNVEKI  480
IASNTLLAGE LARRTKEVEP SNDLLSDQIT QNGDQPNTTT AATTTTTTAN ATATTNMLDW  540
KMALYDQNAT TGTGLEGDDQ SSKLGTHLSN ASSLVTSLSS SREDSPERNN NLPMILGTPP  600
SASKFLGNSN SNSSGTWIPT GTTQLRPHIP VFAAWTDA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37750.1	1e-123	AP2 family protein