PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024975086.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

MYB

Protein Properties

Length: 262aa MW: 30034 Da PI: 4.3607

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024975086.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	46.5	8.6e-15	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+W++eEd++l +++++G +W + ++ g+ R++k+c++rw +yl XP_024975086.1 14 KGAWSEEEDDKLRAYIQRYGHWNWGLLPQFAGLSRSGKSCRLRWMNYL 61 79****************99**********************97 PP
2	Myb_DNA-binding	57.2	3.8e-18	68	112	2	48
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 g++T+eEd+l+vd++++lG++ W++ a++++ gR+++++k+rw+++l XP_024975086.1 68 GNFTKEEDDLIVDLHNKLGNK-WSAMAAKLP-GRSDNEIKNRWNTHL 112 89*****************.*****.**********996 PP

Sequence ? help Back to Top
Protein Sequence Length: 262 aa Download sequence
MVKSISFDKN GVKKGAWSEE EDDKLRAYIQ RYGHWNWGLL PQFAGLSRSG KSCRLRWMNY 60 LRPNIKHGNF TKEEDDLIVD LHNKLGNKWS AMAAKLPGRS DNEIKNRWNT HLKKRSQEDE 120 MIVLENEHDG SIEPDQVEKN ENPNPEILQE VENFLAGSLE SPSCSSGTEL SACWMSGSDY 180 TVSSEVALQT SDYESAGDFW SEPFLPDITS SIDNMLSHSD LIEGYMSHDQ SSCQDVTMSD 240 EFSWSTFDPY FQYNNEPVDW SF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G16770.2	1e-50	MYB family protein