PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024974956.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

NAC

Protein Properties

Length: 467aa MW: 51640 Da PI: 5.7584

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024974956.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	92.6	6.3e-29	89	230	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk....leleevikevd....iykvePwdLpkkvkaeekewyfFskrdkkyatgkrknra.......tks 80 lp G++F+P+d el+ e+L++k+ + ++e+i+++d i++ +P++Lp ++++ ++++fF ++ ++y++g+rk+r+ t++ XP_024974956.1 89 LPIGVKFDPSDVELL-EHLAAKCGVGNekphPYVDEFIPTLDveegICYEHPENLP-GARKDGNSVHFFYRTTNAYTRGRRKRRKicngsslTTD 181 699**********.9999998665545652333446665544559*****.556678999**************87899999889 PP NAM 81 gyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128 +W++tgk+k++++ + ++g kk++v+y + + +k++k +Wvmh+y+l XP_024974956.1 182 VRWHKTGKTKAIFK-NVVHIGYKKIMVLYqtSVEGSKPSKINWVMHQYHL 230 99*******9.9999******5434677778*******98 PP

Sequence ? help Back to Top
Protein Sequence Length: 467 aa Download sequence
MVQTFGYLEH DCTWRKIMHD SFDREVGGSF GILLSKRSWL VDGRAIARKV KTSGLPSALQ 60 IQDCGANWEC PQCSCRIDNS HVSIEWPGLP IGVKFDPSDV ELLEHLAAKC GVGNEKPHPY 120 VDEFIPTLDV EEGICYEHPE NLPGARKDGN SVHFFYRTTN AYTRGRRKRR KICNGSSLTT 180 DVRWHKTGKT KAIFKNVVHI GYKKIMVLYQ TSVEGSKPSK INWVMHQYHL GTDEDEKDGE 240 YVVSKIFYHT KKQSPDKGSR VVELDASTTV TSPATPATPK ADAPDPPRPL KSVLYEDKGG 300 QLARVAGVVA KLIAKEGKSA TLKLCSGEVE VSLVSKNCPA TDEQAGNIGV NRKSMDATGD 360 YRLQSPAQES EWFELKDGVK LPAREDDLQA IDLDAFHNSF FGQDNADAYH PIPGSSFVTD 420 DAVGAARDTS FETIDLENLD VGTPPEFDLT ELYFSSQDSV FGGLDCL

Sequence ? help Back to Top

Protein Sequence Length: 467 aa Download sequence

MVQTFGYLEH DCTWRKIMHD SFDREVGGSF GILLSKRSWL VDGRAIARKV KTSGLPSALQ  60
IQDCGANWEC PQCSCRIDNS HVSIEWPGLP IGVKFDPSDV ELLEHLAAKC GVGNEKPHPY  120
VDEFIPTLDV EEGICYEHPE NLPGARKDGN SVHFFYRTTN AYTRGRRKRR KICNGSSLTT  180
DVRWHKTGKT KAIFKNVVHI GYKKIMVLYQ TSVEGSKPSK INWVMHQYHL GTDEDEKDGE  240
YVVSKIFYHT KKQSPDKGSR VVELDASTTV TSPATPATPK ADAPDPPRPL KSVLYEDKGG  300
QLARVAGVVA KLIAKEGKSA TLKLCSGEVE VSLVSKNCPA TDEQAGNIGV NRKSMDATGD  360
YRLQSPAQES EWFELKDGVK LPAREDDLQA IDLDAFHNSF FGQDNADAYH PIPGSSFVTD  420
DAVGAARDTS FETIDLENLD VGTPPEFDLT ELYFSSQDSV FGGLDCL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G01600.1	7e-85	NAC family protein