PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024974919.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family B3
Protein Properties Length: 270aa    MW: 31300.6 Da    PI: 10.5882
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024974919.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B356.54.9e-18993194
                    EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
              B3  1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94
                    ffk+l++ dv     l lp +fa+++ ++k  ++tl+l+++s  +W++++   k  +ry++ +GW +F ++n+L+ gDf+vF l+++s f   v
  XP_024974919.1  9 FFKILLRDDVDY---LPLPPSFAKKYLKNK--NQTLILKTKSTVKWSIRY--LKIEDRYYFMDGWLKFINDNRLRMGDFLVFWLQSSSIF--QV 93
                    778887777775...57*********7664..559***************..******************************99877777..44 PP
2B345.11.7e-141802611499
                     T-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
              B3  14 grlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                     + l + k+f++  g++  + + ++l++e+g+ Wevk+++ ++ +  +ltkGW +F k+n+++ gD + F ++  ++  l+v+v++k
  XP_024974919.1 180 HKLAMNKSFVKGLGIN--GYRSVRLKNEEGKMWEVKVSMYGGEKVPYLTKGWFDFRKDNKIEIGDKCEFNRV--KNNLLHVHVLKK 261
                     4566667777666766..5667***************99999999*************************55..555579999876 PP
Sequence ? help Back to Top
Protein Sequence    Length: 270 aa     Download sequence    
MQLNNGVSFF KILLRDDVDY LPLPPSFAKK YLKNKNQTLI LKTKSTVKWS IRYLKIEDRY  60
YFMDGWLKFI NDNRLRMGDF LVFWLQSSSI FQVYIYAPNG CLKNPTTSSG NLHRPIHSRV  120
PLFRPLSAIN SLSHVAVAGG GKNHKILKKH IVKVEETSDD DTKEGVQQSF RRVVSKTCIH  180
KLAMNKSFVK GLGINGYRSV RLKNEEGKMW EVKVSMYGGE KVPYLTKGWF DFRKDNKIEI  240
GDKCEFNRVK NNLLHVHVLK KKGKPFLKDP
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31690.17e-18B3 family protein