PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_024974918.1
Organism
Cynara cardunculus var. scolymus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
Family B3
Protein Properties Length: 525aa    MW: 60573 Da    PI: 10.4548
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_024974918.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B335.42e-11181031099
                     HHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
              B3  10 vlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                     + ++  l++p++f++ h ++     ++ l  ++ ++W++   +  + g+ +++kGW eF+k  ++  g  ++Fk++g+s f  +v++f++
  XP_024974918.1  18 NVNKTSLRIPNRFIRGHRKQI-LLNDVLLIVSDDEVWRLGW-MISGEGKLWIQKGWPEFAKHYRIGYGHLLLFKHIGKSIF--HVSIFDS 103
                     444556***********6664.5669***************.4555567****************************9999..****997 PP
2B339.97.5e-131792501490
                     T-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
              B3  14 grlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                     +++ + k+f ++ g++  + + ++l++ +g+ W+vk++   k ++y    GW++F k+n++++gD++ F +++ ++ 
  XP_024974918.1 179 NQMPMKKSFSKSVGIN--GYRNVRLKNDDGKIWKVKVRKYVKERMY---IGWSGFRKDNKIEVGDSCEFDHVKGESV 250
                     4566778888888877..6668***************544444444...49*******************9865443 PP
3B3376.2e-122953801099
                     HHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
              B3  10 vlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                     + ++  l++p++f++ h ++     ++ l  ++ ++W++   +  ++g+ +++kGW eF+k  ++  g  ++Fk++g+s f  +v++f++
  XP_024974918.1 295 NVNKTSLRIPNRFIRGHRKQI-LLNDVLLIVSDDKVWRLGW-MISGDGKLWIQKGWPEFAKHYRIGYGHLLLFKHMGKSIF--HVSIFDS 380
                     444556***********6664.5669***************.5566678***************************99999..****997 PP
4B337.44.5e-124495231999
                     -HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
              B3  19 pkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                      k+fae+ g++  + + ++l++ +g+ W+vk++   k+++ +++  W +F ++n+++ gD++ F +++  +   +v+vf+k
  XP_024974918.1 449 KKSFAESVGIN--GYRSVRLKNDDGKIWKVKVRKYVKKRMLYIR--WLGFREDNKIQIGDSCEFDHVK--GNLIHVRVFKK 523
                     6899*999988..5567***************666666666666..*******************765..55578888876 PP
Sequence ? help Back to Top
Protein Sequence    Length: 525 aa     Download sequence    
MPSRRKPTNF YRVTLSGNVN KTSLRIPNRF IRGHRKQILL NDVLLIVSDD EVWRLGWMIS  60
GEGKLWIQKG WPEFAKHYRI GYGHLLLFKH IGKSIFHVSI FDSSSCEINY TSPSKSPKLQ  120
KLIDLSMTQD DQIEGAGAGG DNDEKSLKKP LVMEETSDDN LIENVRHSMT KVIKKSHVNQ  180
MPMKKSFSKS VGINGYRNVR LKNDDGKIWK VKVRKYVKER MYIGWSGFRK DNKIEVGDSC  240
EFDHVKGESV NNNLTVPLRV CLKKQIVVDY TPSSAVAMPS RRKPTNFYRV TLSGNVNKTS  300
LRIPNRFIRG HRKQILLNDV LLIVSDDKVW RLGWMISGDG KLWIQKGWPE FAKHYRIGYG  360
HLLLFKHMGK SIFHVSIFDS SSCEINYLSP SKSPKLQKGI DRSVTQDDQI EGAGGDYDEK  420
SPKKPLVMEE SSDDDLIENA RHSMTKPMKK SFAESVGING YRSVRLKNDD GKIWKVKVRK  480
YVKKRMLYIR WLGFREDNKI QIGDSCEFDH VKGNLIHVRV FKKHQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.13e-18B3 family protein