PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_024974875.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 223aa MW: 26111.6 Da PI: 9.7275 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 93.1 | 1.3e-29 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 k+ien++nrqvt+skRrngi+KKA+EL vLCda++++i+fs+tgk++ey+s XP_024974875.1 9 KKIENNTNRQVTYSKRRNGIFKKAHELTVLCDAKISLIMFSNTGKFHEYIS 59 68***********************************************86 PP | |||||||
2 | K-box | 81.3 | 2.2e-27 | 71 | 166 | 1 | 95 |
K-box 1 yqkssgksleeakaeslqqelakLkkeienLqreqRhl.lGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaL 94 yq++ g +l+++++e++++ ++kLk+ ++ L++e+R++ lGedL+ L++++L Leqq+++sl+ +R++K++++++q+++ +k+ k+l+++n +L XP_024974875.1 71 YQTTLGFDLWSSHYERMKETMKKLKDSNNRLRKEIRQRvLGEDLDGLDVNDLTILEQQMQDSLTVVRERKYHVIKTQTDTCRKRVKNLEQRNGNL 165 667777789**************************98538****************************************************999 PP K-box 95 r 95 + XP_024974875.1 166 Q 166 7 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 223 aa Download sequence |
MGRGKIEIKK IENNTNRQVT YSKRRNGIFK KAHELTVLCD AKISLIMFSN TGKFHEYISP 60 STTTKKMYDM YQTTLGFDLW SSHYERMKET MKKLKDSNNR LRKEIRQRVL GEDLDGLDVN 120 DLTILEQQMQ DSLTVVRERK YHVIKTQTDT CRKRVKNLEQ RNGNLQLGYD TVRHLEKKYA 180 TGENRGEYES TITYSNGVPD LYGFCAHPNN IPHGYEPHDP RIA |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G54340.1 | 1e-67 | MIKC_MADS family protein |