PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024974846.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

FAR1

Protein Properties

Length: 678aa MW: 78407.8 Da PI: 7.0707

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024974846.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	57	6.5e-18	131	226	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk......tekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHe 88 k+Y++YA+e+GF+vr s++k + + g+it+r +vCsk+g++ ++ + +++ r+++++ gC a++k++ k + +ev+k+ ++HnH XP_024974846.1 131 KMYQKYANEAGFDVRLSNKKIN-KIGRITSRFYVCSKKGRPPSKYFDsldvlpGDRRIRNSNVKCSGCGACFKIHYVKeRRLYEVYKFIEQHNHM 224 68*************98887.6667**********99998899988888899999999********998999**********9 PP FAR1 89 la 90 l+ XP_024974846.1 225 LF 226 97 PP

Sequence ? help Back to Top
Protein Sequence Length: 678 aa Download sequence
MDYMSFNETF SKDIVEESSV FDSMNDCQGF DYGGENATAV NDETIEDQCN YSMRNEDGCN 60 DRNETLCEHN DGVFVDFVDD DVASLSNESE EYRFDGMGET SDGSKCWFPN IDSKHKPKVG 120 DGFETVESAE KMYQKYANEA GFDVRLSNKK INKIGRITSR FYVCSKKGRP PSKYFDSLDV 180 LPGDRRIRNS NVKCSGCGAC FKIHYVKERR LYEVYKFIEQ HNHMLFNKEE MRFSRSKRQL 240 HYGDHKNVFH GSSSKVGVTK SHRFRAITGD VDCSGGTVRD HQNCKRDMAY FVGNEEAQML 300 LNVMSNRRKE LLAIFWADET ARSNYREFGD AISFDATFRM NKHAMIFVLF VAIDNHKKSV 360 VVGATLIHNE SVVDYTWVLK AFVKADGRQP RFVITDQCAS MKQAILIAFP ESKHRLCMWH 420 ITKKLKSKNV HLAPDEFEMK WNNMMDLYGL RGDSWFDELY EIRESWIPAY YKDYHMSGLM 480 KTTSSQWTTH GLLEVTTKST VPRLVSPCKL EAYAVEVVKN KMENSYECSC NCFVRNGILC 540 RHALKVMLND EVDRIPYRYI LRHWRRDLVP VEWLPARFRY GEVDADKESL MSVAYSYFER 600 ILGRVQKEKH ILSKFVDQLQ EWDTKIDSEL PLQSHTQETT TSIKEFLGVS QPENIDVLPP 660 TGIRNKGCGT SKRLISAA

Sequence ? help Back to Top

Protein Sequence Length: 678 aa Download sequence

MDYMSFNETF SKDIVEESSV FDSMNDCQGF DYGGENATAV NDETIEDQCN YSMRNEDGCN  60
DRNETLCEHN DGVFVDFVDD DVASLSNESE EYRFDGMGET SDGSKCWFPN IDSKHKPKVG  120
DGFETVESAE KMYQKYANEA GFDVRLSNKK INKIGRITSR FYVCSKKGRP PSKYFDSLDV  180
LPGDRRIRNS NVKCSGCGAC FKIHYVKERR LYEVYKFIEQ HNHMLFNKEE MRFSRSKRQL  240
HYGDHKNVFH GSSSKVGVTK SHRFRAITGD VDCSGGTVRD HQNCKRDMAY FVGNEEAQML  300
LNVMSNRRKE LLAIFWADET ARSNYREFGD AISFDATFRM NKHAMIFVLF VAIDNHKKSV  360
VVGATLIHNE SVVDYTWVLK AFVKADGRQP RFVITDQCAS MKQAILIAFP ESKHRLCMWH  420
ITKKLKSKNV HLAPDEFEMK WNNMMDLYGL RGDSWFDELY EIRESWIPAY YKDYHMSGLM  480
KTTSSQWTTH GLLEVTTKST VPRLVSPCKL EAYAVEVVKN KMENSYECSC NCFVRNGILC  540
RHALKVMLND EVDRIPYRYI LRHWRRDLVP VEWLPARFRY GEVDADKESL MSVAYSYFER  600
ILGRVQKEKH ILSKFVDQLQ EWDTKIDSEL PLQSHTQETT TSIKEFLGVS QPENIDVLPP  660
TGIRNKGCGT SKRLISAA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	3e-39	FAR1 family protein