PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024974842.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

FAR1

Protein Properties

Length: 345aa MW: 40507.1 Da PI: 10.4345

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024974842.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	68.2	2.1e-21	1	95	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk......tekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 +Y++YA +GF++r +++k + ge+ +r fvCskeg + +++ + e++rr+++ +rtgCka+lkv+ k +g+++v+++ + HnH l+ XP_024974842.1 1 MYRKYADVAGFDIRLASKKMN-SLGEVQTRYFVCSKEGIPPKKEFDslevssGERRRRNTNFKRTGCKACLKVHYVKeSGRYKVYHFIESHNHMLC 95 6************998777.8889**********99998899999889999999***********999**************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 345 aa Download sequence
MYRKYADVAG FDIRLASKKM NSLGEVQTRY FVCSKEGIPP KKEFDSLEVS SGERRRRNTN 60 FKRTGCKACL KVHYVKESGR YKVYHFIESH NHMLCRSDEK LFTRSRRQLD YKDRKFFYHA 120 SSSKVGITQS RRMQLAINGG LVSLGGTARD HMNFRRDIML FVGNKDAQML INKMNKRREH 180 FPEYFFEYKC DEKELIAIFW ANETARMNYK HFGDTISFDT TFRTNKHAMI FVPFVAIDNH 240 KKSVVVGASL IRNESIVNFT WVLRAFMKAH GTQPKFVITD QCATMKQTIP IVFPEATHRL 300 CMWHITKKVK EKMSLLLLLA LSLSFWLRDS LHETDQPLSR LTPFF

Sequence ? help Back to Top

Protein Sequence Length: 345 aa Download sequence

MYRKYADVAG FDIRLASKKM NSLGEVQTRY FVCSKEGIPP KKEFDSLEVS SGERRRRNTN  60
FKRTGCKACL KVHYVKESGR YKVYHFIESH NHMLCRSDEK LFTRSRRQLD YKDRKFFYHA  120
SSSKVGITQS RRMQLAINGG LVSLGGTARD HMNFRRDIML FVGNKDAQML INKMNKRREH  180
FPEYFFEYKC DEKELIAIFW ANETARMNYK HFGDTISFDT TFRTNKHAMI FVPFVAIDNH  240
KKSVVVGASL IRNESIVNFT WVLRAFMKAH GTQPKFVITD QCATMKQTIP IVFPEATHRL  300
CMWHITKKVK EKMSLLLLLA LSLSFWLRDS LHETDQPLSR LTPFF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	1e-46	FAR1 family protein