PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024974809.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

FAR1

Protein Properties

Length: 807aa MW: 93575.9 Da PI: 8.3255

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024974809.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	33.5	1.4e-10	190	265	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 +Y++YA+++GF+vr++ k + k++f + +++ e++ r+++ +r+gC+a++k +++k ++ +e++++++ HnH+l+ XP_024974809.1 190 MYKAYANNTGFDVRMHGGKPK-------KKDFDS-LYKQPS------ERRYRNTNIKRCGCNACIKFHLTKdRSCYEIYEFVESHNHPLF 265 8999******999876665.......344432.222222......34467999***********9999************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 807 aa Download sequence
MENPIVKEFQ NNESDKLNSG YEYGRNLITD DEEDGQSVPI EPKKYDICTH AQRSLILKMF 60 ISVYRLQTHV HICAPYEQLV FVARHNRCSH EHGDDQYEQS ANAVYVNSGI HAQISLILKN 120 IAPYVQLIFI FAPDYFFPST LDSITSSQQE VDYDIGESSE GIKFFIPKVD DALKPNMKTQ 180 YPTINEVERM YKAYANNTGF DVRMHGGKPK KKDFDSLYKQ PSERRYRNTN IKRCGCNACI 240 KFHLTKDRSC YEIYEFVESH NHPLFNNNDR RFSRKNGQMK YIDFKTVLNS SSYKVGARRA 300 HHIQTALNGG FEHTRISEID FKNFKRDAVA CIANKDATML INKLSNRRDV VPGFFFEYKC 360 NEQELSAIFL ADEVARIKYK EFGDVISFNG TFRTNKHAMI FVPYMAVDNH KASVVVGSAL 420 ISGETIDNFT WVLEAFLKCH AKQPVFVITD QCXAMKQAIP KVFTESKHXL CMWHIMKKVP 480 SKVSVALNHD PTFNKVINKL VWNIHIGPSE LESRWNEMID QYNLAGDTWF TEMYEIRHSW 540 IPAYYKDMPM SRLMKTTSRS ESSNSYINIY ESYWFDLVQF LNNYDVAIEK QRYRQSVHET 600 VTRTTNPKFV TPLRLESHAS SIYSRNVFFD IRKEIKKAVW FCTIETIECR DDFKSFVISH 660 NAKKSADNIK YLVGRNYSTN TVECNCNLFT RNGYLCRRTF KIHSVRVRYG EVNAEKEKSI 720 LEVYSKIDDI ISIARNDQSI LDRLGRNLDK FMVDVEKEVP YEDPSQQKLD AIRDHLGVSI 780 PDEADILPPS GIRNKGCGTG KRLVSVS

Sequence ? help Back to Top

Protein Sequence Length: 807 aa Download sequence

MENPIVKEFQ NNESDKLNSG YEYGRNLITD DEEDGQSVPI EPKKYDICTH AQRSLILKMF  60
ISVYRLQTHV HICAPYEQLV FVARHNRCSH EHGDDQYEQS ANAVYVNSGI HAQISLILKN  120
IAPYVQLIFI FAPDYFFPST LDSITSSQQE VDYDIGESSE GIKFFIPKVD DALKPNMKTQ  180
YPTINEVERM YKAYANNTGF DVRMHGGKPK KKDFDSLYKQ PSERRYRNTN IKRCGCNACI  240
KFHLTKDRSC YEIYEFVESH NHPLFNNNDR RFSRKNGQMK YIDFKTVLNS SSYKVGARRA  300
HHIQTALNGG FEHTRISEID FKNFKRDAVA CIANKDATML INKLSNRRDV VPGFFFEYKC  360
NEQELSAIFL ADEVARIKYK EFGDVISFNG TFRTNKHAMI FVPYMAVDNH KASVVVGSAL  420
ISGETIDNFT WVLEAFLKCH AKQPVFVITD QCXAMKQAIP KVFTESKHXL CMWHIMKKVP  480
SKVSVALNHD PTFNKVINKL VWNIHIGPSE LESRWNEMID QYNLAGDTWF TEMYEIRHSW  540
IPAYYKDMPM SRLMKTTSRS ESSNSYINIY ESYWFDLVQF LNNYDVAIEK QRYRQSVHET  600
VTRTTNPKFV TPLRLESHAS SIYSRNVFFD IRKEIKKAVW FCTIETIECR DDFKSFVISH  660
NAKKSADNIK YLVGRNYSTN TVECNCNLFT RNGYLCRRTF KIHSVRVRYG EVNAEKEKSI  720
LEVYSKIDDI ISIARNDQSI LDRLGRNLDK FMVDVEKEVP YEDPSQQKLD AIRDHLGVSI  780
PDEADILPPS GIRNKGCGTG KRLVSVS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	4e-52	FAR1 family protein