PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024974786.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

MIKC_MADS

Protein Properties

Length: 254aa MW: 29083.8 Da PI: 7.3674

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024974786.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	99.7	1.1e-31	9	59	1	51
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krienk+nrqvtf+kRrng+lKKA+ELSvLCdaeva+iifs++gklye++s XP_024974786.1 9 KRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCS 59 79***********************************************96 PP
2	K-box	83	6.5e-28	81	174	7	100
K-box 7 ksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100 + +++ ++++++e+ kLk+++e+Lq+ qR++ GedL++LslkeL+qLe+qL++ l++iRs +++ +l+ ++elq +e++ e+nkaL++klee XP_024974786.1 81 DRSATNAEQNSYKEYMKLKAKYESLQQYQRQIFGEDLGPLSLKELEQLERQLDSTLRQIRSIRTQSMLDRLSELQVQERMWLEANKALQNKLEE 174 446778899**********************************************************************************987 PP

Sequence ? help Back to Top
Protein Sequence Length: 254 aa Download sequence
MGRGRVELKR IENKINRQVT FAKRRNGLLK KAYELSVLCD AEVALIIFSN RGKLYEFCST 60 SNMLKMLERY QNCTYGSMEV DRSATNAEQN SYKEYMKLKA KYESLQQYQR QIFGEDLGPL 120 SLKELEQLER QLDSTLRQIR SIRTQSMLDR LSELQVQERM WLEANKALQN KLEEVYAENQ 180 AGPSWAGAGA GPAPGEHCCS YEQHHQHPQS QDFFQPLDCN SNLQMGYNAV GSSQLTTSTN 240 GQNLNGLDSG WMML

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G15800.1	1e-101	MIKC_MADS family protein