PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_024974727.1

Organism

Cynara cardunculus var. scolymus

Taxonomic ID

59895

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Carduoideae; Cardueae; Carduinae; Cynara; Cynara cardunculus; Cynara cardunculus subsp. cardunculus

Family

FAR1

Protein Properties

Length: 658aa MW: 76328.3 Da PI: 8.4822

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_024974727.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	24.6	8e-08	119	158	52	90
FAR1 52 rrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 r+++ +r gC a+lk+++ k +++ev+k++++HnH l+ XP_024974727.1 119 IRNSNIKRSGCGACLKIHLVKePNQYEVYKFVEQHNHILF 158 578999***********9989************997 PP

Sequence ? help Back to Top
Protein Sequence Length: 658 aa Download sequence
MDPISFNETF VKDIFDEIDG INGKRKGVVH DREFTTVTND DKVYAEFDDD DVASLSNENE 60 DYRYQDMGET SDGSKYWFPS VDVKYKPKVG DSFESVESAE KMYRKYANEV GFDVRGRTIR 120 NSNIKRSGCG ACLKIHLVKE PNQYEVYKFV EQHNHILFNK EEMRFSRSKR QLHYADHKNV 180 FHGSSSKVGV TKSHRFIKAV KGGVDSSGGT VRDHQNFKRD MTYFVGNKDA QMLLNVMANR 240 RKVCLEFFFE YKCDDKELAI FWADETARSN YREFGDAISF DATFRTNKHA MIFVPFVAID 300 NHKKSVVVGA ALIYNESVVD YTWISNYLQH RTQFVSKFNK LTWNVHLGPN EFEMQWNNLI 360 DFYGLRGDPW FDELYNIRES WIPAYYKDYH MSGLMKTTSR SESINAIFNV YAHFWHDLVV 420 FLRSFDNAVE SQRATHGSLE VTTKSTIPRL VSPCKLEAHA AEVYTRTIFF EIQKELRKAV 480 WLCGWDGFTD IGETRVYIIT HKNKASKVTT KYTVIKNKME NSYDCSCNCF VRNGISCRHA 540 LKVMLNDEVD KIPDKYILRR WRRDLVPVEW LPAHFRYGES HTEETTSSIK EFLGVSQPET 600 VDVLPPTGIR NKGCGTGKRL ISAAEKAIPN GKKQNKKCRL CGQMATHDSR NCPKRDYI

Sequence ? help Back to Top

Protein Sequence Length: 658 aa Download sequence

MDPISFNETF VKDIFDEIDG INGKRKGVVH DREFTTVTND DKVYAEFDDD DVASLSNENE  60
DYRYQDMGET SDGSKYWFPS VDVKYKPKVG DSFESVESAE KMYRKYANEV GFDVRGRTIR  120
NSNIKRSGCG ACLKIHLVKE PNQYEVYKFV EQHNHILFNK EEMRFSRSKR QLHYADHKNV  180
FHGSSSKVGV TKSHRFIKAV KGGVDSSGGT VRDHQNFKRD MTYFVGNKDA QMLLNVMANR  240
RKVCLEFFFE YKCDDKELAI FWADETARSN YREFGDAISF DATFRTNKHA MIFVPFVAID  300
NHKKSVVVGA ALIYNESVVD YTWISNYLQH RTQFVSKFNK LTWNVHLGPN EFEMQWNNLI  360
DFYGLRGDPW FDELYNIRES WIPAYYKDYH MSGLMKTTSR SESINAIFNV YAHFWHDLVV  420
FLRSFDNAVE SQRATHGSLE VTTKSTIPRL VSPCKLEAHA AEVYTRTIFF EIQKELRKAV  480
WLCGWDGFTD IGETRVYIIT HKNKASKVTT KYTVIKNKME NSYDCSCNCF VRNGISCRHA  540
LKVMLNDEVD KIPDKYILRR WRRDLVPVEW LPAHFRYGES HTEETTSSIK EFLGVSQPET  600
VDVLPPTGIR NKGCGTGKRL ISAAEKAIPN GKKQNKKCRL CGQMATHDSR NCPKRDYI

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	1e-53	FAR1 family protein